Factsheet for Zm00001d007974_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d028948_P001
Zm00001d033980_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37240.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT4G37240.1	Zm00001d005003_P002	AT2G41090.1	17360592
AT4G37240.1	Zm00001d008278_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d010649_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d028948_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d038543_P004	AT2G41090.1	17360592
AT4G37240.1	Zm00001d038545_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d041430_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d043144_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d047597_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d052415_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT4G37240.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT4G37240.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d052415_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d033980_P001	AT4G14640.1	17360592
AT4G37240.1	Zm00001d005003_P002	AT5G21274.1	17360592
AT4G37240.1	Zm00001d008278_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d010649_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d028948_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d038543_P004	AT5G21274.1	17360592
AT4G37240.1	Zm00001d038545_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d041430_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d043144_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d047597_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d052415_P001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018717_P001	Maize	cytosol	54.4	54.12
TraesCS2A01G266100.1	Wheat	cytosol	45.6	53.33
TraesCS2B01G276100.1	Wheat	cytosol, extracellular, plastid	51.3	52.66
EER95817	Sorghum	nucleus	52.85	52.58
TraesCS2D01G257700.1	Wheat	mitochondrion, nucleus, plastid	50.78	52.13
TraesCS2A01G266000.1	Wheat	plastid	51.81	52.08
TraesCS2B01G276000.1	Wheat	cytosol, nucleus, plastid	50.26	51.6
TraesCS1D01G444700.1	Wheat	cytosol, extracellular, peroxisome, plastid	49.22	51.08
HORVU2Hr1G061800.1	Barley	plastid	50.26	51.05
TraesCS1A01G436400.1	Wheat	plastid	49.74	50.79
TraesCS2D01G257800.1	Wheat	plastid	50.26	50.52
TraesCS1A01G436300.1	Wheat	mitochondrion	49.22	50.0
HORVU1Hr1G094330.1	Barley	cytosol	48.19	49.73
TraesCS1D01G444800.1	Wheat	cytosol, plastid	47.15	48.92
TraesCS1B01G471500.1	Wheat	mitochondrion	46.11	48.11
Zm00001d034190_P001	Maize	cytosol	43.52	46.15
Os07t0123100-00	Rice	extracellular	46.63	43.9
Zm00001d013178_P001	Maize	cytosol	41.45	43.01
Zm00001d013311_P001	Maize	plastid	32.64	39.38
Zm00001d033943_P001	Maize	plastid	33.68	39.16
GSMUA_Achr7P27420_001	Banana	cytosol	26.94	31.52
Bra012084.1-P	Field mustard	cytosol	21.76	30.0
CDY45243	Canola	cytosol	21.76	30.0
CDY42708	Canola	nucleus	26.42	29.82
Bra031814.1-P	Field mustard	cytosol	23.32	29.8
CDY55087	Canola	cytosol	23.32	29.8
CDX77946	Canola	cytosol	22.8	29.73
Bra017789.1-P	Field mustard	nucleus	25.91	29.24
CDX72612	Canola	nucleus	25.91	29.24
Bra036862.1-P	Field mustard	cytosol	22.28	29.05
CDX81387	Canola	cytosol	23.32	29.03
GSMUA_Achr2P08730_001	Banana	cytosol	24.87	28.92
CDX90684	Canola	cytosol, nucleus, plastid	23.32	28.85
Bra012887.1-P	Field mustard	cytosol, nucleus, plastid	23.32	28.85
CDX73789	Canola	cytosol	22.8	28.76
Solyc02g089990.1.1	Tomato	nucleus	23.83	28.57
PGSC0003DMT400026013	Potato	cytosol, nucleus, plastid	23.83	28.4
AT3G50800.1	Thale cress	cytosol, nucleus, plastid	22.28	28.29
Bra032151.1-P	Field mustard	cytosol	23.83	28.22
CDY39665	Canola	cytosol	23.83	28.22
CDY28982	Canola	nucleus	22.8	28.21
AT4G37240.1	Thale cress	cytosol, nucleus, plastid	24.35	27.98
CDY22462	Canola	cytosol, nucleus, plastid	24.87	27.75
Bra037163.1-P	Field mustard	cytosol	22.28	27.74
CDY18612	Canola	cytosol	22.28	27.74
CDX89594	Canola	cytosol	23.32	27.61
PGSC0003DMT400059007	Potato	cytosol, nucleus, plastid	20.73	27.59
AT5G66580.1	Thale cress	cytosol	22.28	27.56
Bra010578.1-P	Field mustard	cytosol, nucleus, plastid	21.24	27.33
CDY24764	Canola	cytosol, nucleus, plastid	24.35	27.17
VIT_00s0207g00140.t01	Wine grape	cytosol	22.8	26.99
AT2G23690.1	Thale cress	cytosol	22.8	26.99
CDY28078	Canola	cytosol	22.28	26.88
Zm00001d046687_P001	Maize	plastid	29.02	26.79
Solyc03g044860.1.1	Tomato	cytosol	20.21	26.71
CDX69254	Canola	cytosol	24.35	26.4
CDY46066	Canola	cytosol	22.28	26.38
VIT_00s0207g00180.t01	Wine grape	cytosol	22.28	26.38
Solyc02g065430.1.1	Tomato	cytosol	20.73	26.32
PGSC0003DMT400007187	Potato	cytosol	20.73	26.32
Bra011715.1-P	Field mustard	nucleus	23.83	26.29
CDX75606	Canola	nucleus	23.83	26.29
CDX76853	Canola	cytosol	22.28	26.22
Zm00001d036787_P001	Maize	plastid	29.02	25.81
KRH69989	Soybean	cytosol	21.76	25.45
Bra039208.1-P	Field mustard	cytosol	18.13	25.18
KRH08345	Soybean	cytosol	22.28	25.15
Zm00001d015867_P001	Maize	plastid	27.46	24.77
KRH76906	Soybean	cytosol	20.21	24.53
Zm00001d020967_P001	Maize	plastid	29.53	24.36
KRH28562	Soybean	cytosol	20.21	23.93
VIT_03s0063g01940.t01	Wine grape	cytosol	21.24	23.56
Zm00001d020968_P001	Maize	plastid	23.32	19.82

Protein Annotations

EnsemblPlants:Zm00001d007974_P001	EnsemblPlants:Zm00001d007974_T001	EnsemblPlantsGene:Zm00001d007974	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF62	PFAM:PF14009	ProteinID:ONM28094.1	SEG:seg
UniParc:UPI0002218593	UniProt:A0A1D6FAJ6	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr2:+:244365350..244365931

Molecular Weight (calculated)

20864.7 Da

IEP (calculated)

11.129

GRAVY (calculated)

-0.523

Length

193 amino acids

Sequence
(BLAST)

001: MGLCMSRGET TPTRAAPPPS KDTALVLMPS GEMREYPPHT ATAARVLQDA SASASADWFL CDADRVGFEG PVPALGGAEA LRAGQIYFVL PAAARRRGLR
101: REDVAALAVR ASAALSARHS CARGKRSRRC GAVAPLVFAP PPPPEDEEEE HGRWETFVAA RKAPPVRRHS RPTSRRSRSA RWRVSSEGSD WRG

Best Arabidopsis Sequence Match ( AT1G76600.1 )
(BLAST)

001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN

Arabidopsis Description

Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.