Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 1
- mitochondrion 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G436400.1 | Wheat | plastid | 88.71 | 87.3 |
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 84.95 | 84.04 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 83.33 | 82.89 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 82.8 | 82.8 |
| TraesCS2D01G257800.1 | Wheat | plastid | 79.03 | 76.56 |
| TraesCS5D01G414300.1 | Wheat | cytosol | 53.76 | 56.82 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 53.76 | 56.82 |
| Os07t0123100-00 | Rice | extracellular | 61.83 | 56.1 |
| TraesCS5D01G414000.1 | Wheat | cytosol | 53.76 | 55.87 |
| TraesCS5D01G414100.1 | Wheat | cytosol | 52.69 | 54.75 |
| Zm00001d018717_P001 | Maize | cytosol | 54.84 | 52.58 |
| EER95817 | Sorghum | nucleus | 54.3 | 52.06 |
| Zm00001d007974_P001 | Maize | nucleus | 51.08 | 49.22 |
| TraesCS5D01G389400.1 | Wheat | plastid | 39.25 | 43.2 |
| Solyc02g089990.1.1 | Tomato | nucleus | 32.26 | 37.27 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 32.26 | 37.04 |
| CDY45243 | Canola | cytosol | 27.42 | 36.43 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 32.26 | 36.14 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 31.18 | 35.15 |
| Bra012084.1-P | Field mustard | cytosol | 26.34 | 35.0 |
| CDX77946 | Canola | cytosol | 27.42 | 34.46 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 30.11 | 34.36 |
| Bra036862.1-P | Field mustard | cytosol | 26.88 | 33.78 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 29.57 | 33.74 |
| TraesCS6D01G158200.1 | Wheat | plastid | 19.35 | 33.64 |
| AT5G66580.1 | Thale cress | cytosol | 27.96 | 33.33 |
| CDX73789 | Canola | cytosol | 27.42 | 33.33 |
| CDX81387 | Canola | cytosol | 27.42 | 32.9 |
| KRH76906 | Soybean | cytosol | 27.96 | 32.7 |
| CDY28982 | Canola | nucleus | 27.42 | 32.69 |
| KRH28562 | Soybean | cytosol | 28.49 | 32.52 |
| CDY55087 | Canola | cytosol | 26.34 | 32.45 |
| Bra031814.1-P | Field mustard | cytosol | 26.34 | 32.45 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 25.27 | 32.41 |
| Solyc02g065430.1.1 | Tomato | cytosol | 26.34 | 32.24 |
| PGSC0003DMT400007187 | Potato | cytosol | 26.34 | 32.24 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 29.03 | 32.14 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 26.88 | 32.05 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 26.88 | 32.05 |
| Bra037163.1-P | Field mustard | cytosol | 26.34 | 31.61 |
| CDY18612 | Canola | cytosol | 26.34 | 31.61 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 25.81 | 31.58 |
| Solyc03g044860.1.1 | Tomato | cytosol | 24.73 | 31.51 |
| Bra032151.1-P | Field mustard | cytosol | 27.42 | 31.29 |
| CDY46066 | Canola | cytosol | 27.42 | 31.29 |
| CDY39665 | Canola | cytosol | 27.42 | 31.29 |
| CDX76853 | Canola | cytosol | 27.42 | 31.1 |
| Bra039208.1-P | Field mustard | cytosol | 23.12 | 30.94 |
| AT2G23690.1 | Thale cress | cytosol | 26.88 | 30.67 |
| CDY28078 | Canola | cytosol | 26.34 | 30.62 |
| Bra017789.1-P | Field mustard | nucleus | 27.96 | 30.41 |
| CDX72612 | Canola | nucleus | 27.96 | 30.41 |
| CDX89594 | Canola | cytosol | 26.34 | 30.06 |
| KRH08345 | Soybean | cytosol | 27.42 | 29.82 |
| CDY42708 | Canola | nucleus | 27.42 | 29.82 |
| KRH69989 | Soybean | cytosol | 26.34 | 29.7 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 27.42 | 29.48 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 27.42 | 29.48 |
| TraesCS7D01G390000.1 | Wheat | plastid | 30.65 | 29.08 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 23.12 | 28.67 |
| CDX69254 | Canola | cytosol | 27.42 | 28.65 |
| Bra011715.1-P | Field mustard | nucleus | 26.88 | 28.57 |
| CDX75606 | Canola | nucleus | 26.88 | 28.57 |
| TraesCS6D01G158000.1 | Wheat | plastid | 29.03 | 28.27 |
| TraesCS6D01G157700.1 | Wheat | plastid | 29.57 | 28.06 |
| TraesCS6D01G157600.1 | Wheat | plastid | 28.49 | 27.89 |
| TraesCS6D01G158100.1 | Wheat | plastid | 27.42 | 27.57 |
| TraesCS7D01G390200.1 | Wheat | mitochondrion, plastid | 29.03 | 27.55 |
| TraesCS5D01G278000.1 | Wheat | plastid | 28.49 | 27.46 |
| TraesCS5D01G278100.1 | Wheat | plastid | 31.72 | 27.19 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 25.27 | 27.01 |
| TraesCS5D01G278200.1 | Wheat | plastid | 31.18 | 26.24 |
| TraesCS7D01G390100.1 | Wheat | plastid | 30.65 | 23.85 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G444700.1 | EnsemblPlantsGene:TraesCS1D01G444700 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF62 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:487864440..487865000
Molecular Weight (calculated)
19524.6 Da
IEP (calculated)
8.028
GRAVY (calculated)
0.003
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCMSSGSA VPEAAVWAKG QPASTAMVLL PMGELREYPR PATAGQALED SVAGDASWFL CDADEMGFEG PVAAVAVAEE LRPGQIYFVL PAEARRNGLQ
101: REDLAALAVR ASVALVNKAN AGGGRRRRAG AVAPLIFAPP QEVVETIAYK NVPALAAKRR PVARAKSAGR MQPRFAPDLT AIPECE
101: REDLAALAVR ASVALVNKAN AGGGRRRRAG AVAPLIFAPP QEVVETIAYK NVPALAAKRR PVARAKSAGR MQPRFAPDLT AIPECE
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.