Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046278 | Potato | cytosol | 47.8 | 98.7 |
| TraesCS3D01G194500.2 | Wheat | cytosol | 96.86 | 96.86 |
| Bra025438.1-P | Field mustard | cytosol | 68.55 | 96.46 |
| PGSC0003DMT400054299 | Potato | cytosol | 68.55 | 96.46 |
| TraesCS1A01G308800.1 | Wheat | cytosol | 77.36 | 93.89 |
| KRH18664 | Soybean | cytosol | 76.73 | 87.14 |
| CDY56411 | Canola | cytosol | 79.25 | 84.56 |
| CDY04474 | Canola | cytosol | 79.25 | 84.56 |
| Bra019453.1-P | Field mustard | cytosol | 79.25 | 84.56 |
| Bra012037.1-P | Field mustard | cytosol | 79.25 | 84.56 |
| TraesCS3B01G219900.1 | Wheat | cytosol | 92.45 | 84.48 |
| PGSC0003DMT400014123 | Potato | mitochondrion | 64.78 | 84.43 |
| PGSC0003DMT400070437 | Potato | cytosol | 78.62 | 83.89 |
| GSMUA_Achr6P15990_001 | Banana | cytosol | 78.62 | 83.89 |
| PGSC0003DMT400018569 | Potato | cytosol | 78.62 | 83.89 |
| Solyc12g099990.1.1 | Tomato | nucleus | 78.62 | 83.89 |
| Bra020155.1-P | Field mustard | cytosol | 78.62 | 83.89 |
| Solyc11g072240.1.1 | Tomato | cytosol | 78.62 | 83.89 |
| Solyc10g077010.1.1 | Tomato | cytosol | 78.62 | 83.89 |
| Solyc01g008950.2.1 | Tomato | nucleus | 78.62 | 83.89 |
| Bra006595.1-P | Field mustard | cytosol | 78.62 | 83.89 |
| PGSC0003DMT400058435 | Potato | cytosol | 78.62 | 83.89 |
| Bra002368.1-P | Field mustard | cytosol | 78.62 | 83.89 |
| Solyc10g081170.1.1 | Tomato | extracellular | 77.99 | 83.22 |
| Os01t0279300-01 | Rice | cytosol, plasma membrane, plastid | 77.99 | 83.22 |
| KRG94975 | Soybean | nucleus | 77.99 | 83.22 |
| GSMUA_Achr6P23670_001 | Banana | cytosol | 77.99 | 83.22 |
| VIT_08s0040g00470.t01 | Wine grape | cytosol | 77.99 | 83.22 |
| CDY65072 | Canola | cytosol | 77.99 | 83.22 |
| AT3G56800.1 | Thale cress | cytosol | 77.36 | 82.55 |
| Bra003251.1-P | Field mustard | cytosol | 77.36 | 82.55 |
| Bra014671.1-P | Field mustard | cytosol | 77.36 | 82.55 |
| Bra000214.1-P | Field mustard | cytosol | 77.36 | 82.55 |
| AT5G21274.1 | Thale cress | cytosol | 77.36 | 82.55 |
| CDY55678 | Canola | cytosol | 77.36 | 82.55 |
| CDX99690 | Canola | cytosol | 76.73 | 81.88 |
| CDX96148 | Canola | cytosol | 76.73 | 81.88 |
| Bra007269.1-P | Field mustard | cytosol | 76.73 | 81.88 |
| Bra004166.1-P | Field mustard | cytosol | 76.73 | 81.88 |
| CDY12321 | Canola | cytosol | 74.21 | 81.38 |
| Bra034981.1-P | Field mustard | cytosol | 74.21 | 81.38 |
| CDX92401 | Canola | cytosol | 68.55 | 81.34 |
| VIT_06s0009g01910.t01 | Wine grape | cytosol | 77.99 | 81.05 |
| CDX75970 | Canola | cytosol | 57.86 | 80.7 |
| CDY27651 | Canola | cytosol | 76.1 | 80.67 |
| AT1G66410.2 | Thale cress | cytosol | 76.73 | 76.73 |
| AT2G41110.2 | Thale cress | cytosol | 77.36 | 76.4 |
| TraesCS3A01G184500.1 | Wheat | cytosol | 77.36 | 75.0 |
| AT5G37780.3 | Thale cress | cytosol | 77.99 | 70.86 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 76.1 | 69.94 |
| Bra034317.1-P | Field mustard | cytosol | 77.99 | 69.27 |
| CDY48191 | Canola | cytosol | 77.99 | 69.27 |
| CDX77060 | Canola | cytosol | 77.99 | 68.89 |
| AT2G27030.3 | Thale cress | cytosol | 77.36 | 67.96 |
| KRG89812 | Soybean | cytosol, mitochondrion | 70.44 | 67.88 |
| TraesCS3A01G335000.1 | Wheat | cytosol | 76.1 | 66.48 |
| CDY57144 | Canola | cytosol | 57.86 | 63.01 |
| CDY30947 | Canola | cytosol | 78.62 | 59.81 |
| AT3G43810.2 | Thale cress | cytosol | 77.36 | 57.48 |
| CDY21220 | Canola | cytosol | 77.99 | 56.11 |
| TraesCS5A01G139700.1 | Wheat | cytosol | 59.75 | 52.78 |
| TraesCS5A01G057100.1 | Wheat | cytosol | 54.72 | 52.73 |
| TraesCS5A01G057200.1 | Wheat | cytosol | 53.46 | 52.15 |
| TraesCS5A01G382800.2 | Wheat | plastid | 54.72 | 46.52 |
| AT2G41090.1 | Thale cress | cytosol | 49.69 | 41.36 |
| TraesCS7A01G316100.1 | Wheat | cytosol, unclear | 37.11 | 39.86 |
| TraesCS1A01G308700.1 | Wheat | cytosol | 35.85 | 37.5 |
| TraesCS2A01G166500.1 | Wheat | cytosol, mitochondrion | 35.85 | 33.93 |
| TraesCS1A01G416100.1 | Wheat | cytosol | 35.85 | 33.14 |
| TraesCS1A01G193700.1 | Wheat | cytosol | 34.59 | 28.5 |
| AT2G41100.1 | Thale cress | cytosol | 45.91 | 22.53 |
| TraesCS3A01G216300.1 | Wheat | cytosol | 33.96 | 21.18 |
| TraesCS5A01G382700.1 | Wheat | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G191900.1 | EnsemblPlantsGene:TraesCS3A01G191900 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF250 |
| PFAM:PF13499 | PFAM:PF13833 | PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 | SUPFAM:SSF47473 |
| TIGR:cd00051 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:246041877..246044388
Molecular Weight (calculated)
17881.3 Da
IEP (calculated)
4.050
GRAVY (calculated)
-0.281
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLLDLFALS VLVNERPGTI CWIVLGFEGS RIPIPGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF
101: RVFDKDQNGF ISAAELRHVM TNLGEKLTDE EVDEMVREAD VDGDGQINYD EFVKVMMAK
101: RVFDKDQNGF ISAAELRHVM TNLGEKLTDE EVDEMVREAD VDGDGQINYD EFVKVMMAK
001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
Arabidopsis Description
CAM5Calmodulin 5 [Source:UniProtKB/TrEMBL;Acc:F4IVN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.