Factsheet for TraesCS5A01G409800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G308700.1
TraesCS1A01G308800.1
TraesCS1B01G319300.1
TraesCS1D01G308000.1
TraesCS2B01G113800.2
TraesCS3A01G184500.1
TraesCS3A01G191900.1
TraesCS3A01G335000.1
TraesCS3B01G219900.1
TraesCS3B01G365900.1
TraesCS3D01G188600.1
TraesCS3D01G194500.2
TraesCS3D01G328300.1
TraesCS4B01G131100.1
TraesCS4D01G126100.1
TraesCS5A01G057100.1
TraesCS5A01G057200.1
TraesCS5A01G139700.1
TraesCS5B01G059900.1
TraesCS5B01G137100.1
TraesCS5D01G068000.1
TraesCS5D01G068100.1
TraesCS5D01G153400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04890.1	TraesCS1A01G308700.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS1A01G308800.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS1B01G319300.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS1D01G308000.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS2B01G113800.2	AT2G41100.1	17360592
AT2G04890.1	TraesCS3A01G184500.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS3A01G191900.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS3A01G335000.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS3B01G219900.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS3B01G365900.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS3D01G188600.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS3D01G194500.2	AT2G41100.1	17360592
AT2G04890.1	TraesCS3D01G328300.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS4B01G131100.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS4D01G126100.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS5A01G057100.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS5A01G057200.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS5A01G139700.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS5B01G059900.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS5B01G137100.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS5D01G068000.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS5D01G068100.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS5D01G153400.1	AT2G41100.1	17360592
AT2G04890.1	TraesCS1A01G308700.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS1A01G308800.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS1B01G319300.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS1D01G308000.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS2B01G113800.2	AT5G21274.1	17360592
AT2G04890.1	TraesCS3A01G184500.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS3A01G191900.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS3A01G335000.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS3B01G219900.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS3B01G365900.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS3D01G188600.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS3D01G194500.2	AT5G21274.1	17360592
AT2G04890.1	TraesCS3D01G328300.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS4B01G131100.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS4D01G126100.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS5A01G057100.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS5A01G057200.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS5A01G139700.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS5B01G059900.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS5B01G137100.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS5D01G068000.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS5D01G068100.1	AT5G21274.1	17360592
AT2G04890.1	TraesCS5D01G153400.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G419400.2	Wheat	cytosol	97.6	88.91
TraesCS5A01G414000.1	Wheat	cytosol	72.85	85.68
Zm00001d030500_P001	Maize	nucleus	82.63	76.38
HORVU5Hr1G099160.1	Barley	plastid	92.42	73.49
GSMUA_Achr4P07010_001	Banana	cytosol	44.31	67.68
TraesCS4A01G039000.1	Wheat	nucleus	64.67	66.26
Bra026077.1-P	Field mustard	cytosol	37.33	63.61
Bra015156.1-P	Field mustard	cytosol	40.32	63.52
CDY00883	Canola	cytosol	48.1	59.51
GSMUA_Achr4P11050_001	Banana	nucleus	46.91	59.19
AT2G04890.1	Thale cress	cytosol	48.7	59.08
VIT_12s0057g00560.t01	Wine grape	cytosol	62.08	57.06
GSMUA_AchrUn_...	Banana	nucleus	48.7	57.01
PGSC0003DMT400015696	Potato	cytosol	60.28	56.45
CDY71156	Canola	cytosol, plastid	43.71	56.15
KRH14104	Soybean	cytosol	61.08	56.15
KRH74015	Soybean	cytosol	60.08	55.64
Solyc07g047950.1.1	Tomato	mitochondrion	60.48	55.6
VIT_19s0090g01740.t01	Wine grape	cytosol	60.28	55.41
AT5G48150.4	Thale cress	cytosol	54.09	55.31
CDY07309	Canola	cytosol	26.35	55.0
CDX86324	Canola	cytosol, nucleus, plastid	54.29	54.73
CDY05700	Canola	cytosol, plastid	54.09	54.53
CDY54511	Canola	cytosol, nucleus, plastid	54.09	54.53
CDY71174	Canola	cytosol, plastid	54.09	54.53
Bra020715.1-P	Field mustard	cytosol, plastid	54.09	54.53
CDY19966	Canola	cytosol	53.49	54.25
CDY00074	Canola	cytosol, plastid	53.69	54.12
Bra036185.1-P	Field mustard	cytosol	53.29	53.94
CDY22807	Canola	nucleus	45.11	53.81
CDY37124	Canola	nucleus	45.11	53.81
TraesCS2A01G189600.1	Wheat	cytosol	58.88	53.25
VIT_00s0463g00020.t01	Wine grape	nucleus	57.88	53.21
PGSC0003DMT400057111	Potato	nucleus	56.29	52.51
Solyc07g065270.1.1	Tomato	nucleus	56.29	52.42
Bra018860.1-P	Field mustard	nucleus	54.49	52.0
KRH73868	Soybean	cytosol	56.09	51.56
PGSC0003DMT400034763	Potato	cytosol	54.69	51.31
KRH14274	Soybean	cytosol	55.49	51.01
KRG98562	Soybean	nucleus	55.49	51.01
Solyc11g012510.1.1	Tomato	mitochondrion	54.29	50.18
KRH46306	Soybean	cytosol	54.49	50.09
PGSC0003DMT400060553	Potato	cytosol	52.3	50.0
KRH01979	Soybean	cytosol	54.29	49.91
KRH11548	Soybean	nucleus	54.69	49.64
KRH36572	Soybean	cytosol	54.09	49.45
Bra021063.1-P	Field mustard	plastid	52.3	49.43
CDY58168	Canola	plastid	52.3	49.43
KRH51175	Soybean	cytosol	53.29	49.26
CDY50128	Canola	cytosol, plastid	51.9	48.78
AT4G17230.1	Thale cress	cytosol	51.3	48.58
CDY35589	Canola	cytosol	50.7	47.83
Bra026237.1-P	Field mustard	plastid	50.5	47.29
CDY42968	Canola	cytosol	50.5	47.29
PGSC0003DMT400021748	Potato	nucleus	52.49	47.05
Solyc04g014830.1.1	Tomato	mitochondrion	51.9	47.02
AT1G50600.2	Thale cress	golgi, mitochondrion	54.69	45.59
KRH38269	Soybean	cytosol	30.34	43.06
TraesCS2A01G214400.1	Wheat	cytosol	47.7	41.93
TraesCS3A01G408000.1	Wheat	cytosol	41.52	37.68
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	22.95	34.53
TraesCS5A01G505900.1	Wheat	cytosol	24.35	30.12
TraesCS4A01G176400.1	Wheat	cytosol	24.75	24.9
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	28.14	22.35
TraesCS4A01G176700.1	Wheat	cytosol	29.34	22.04
TraesCS5A01G506000.1	Wheat	cytosol	26.55	22.02
TraesCS5A01G506100.1	Wheat	cytosol	27.15	21.15
TraesCS4A01G177100.1	Wheat	nucleus	26.35	20.53
TraesCS4A01G176500.1	Wheat	cytosol	19.96	20.08
TraesCS4A01G176300.1	Wheat	cytosol	26.35	19.56
TraesCS5A01G481300.1	Wheat	cytosol	25.35	19.39
TraesCS7A01G173000.1	Wheat	cytosol	28.94	19.39
TraesCS4A01G176600.1	Wheat	cytosol	24.75	19.11
TraesCS5A01G080300.1	Wheat	cytosol	26.95	18.15
TraesCS3A01G068000.1	Wheat	nucleus	25.75	18.02
TraesCS5A01G139000.1	Wheat	cytosol, plastid	27.35	17.65
TraesCS1A01G030300.1	Wheat	cytosol	24.55	17.42
TraesCS3A01G067900.1	Wheat	cytosol	24.55	17.04
TraesCS4A01G176200.1	Wheat	peroxisome	26.95	16.83
TraesCS1A01G030200.1	Wheat	cytosol	23.95	16.64
TraesCS3A01G360300.1	Wheat	cytosol, extracellular, nucleus	24.95	15.82

Protein Annotations

EnsemblPlants:TraesCS5A01G409800.1	EnsemblPlantsGene:TraesCS5A01G409800	InterPro:CIGR2	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF31	PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:

Description

No Description!

Coordinates

chr5A:-:599222578..599224482

Molecular Weight (calculated)

55300.6 Da

IEP (calculated)

5.994

GRAVY (calculated)

-0.192

Length

501 amino acids

Sequence
(BLAST)

001: MSAKASERDG SQKISSNPQV FEAQYCTLES SSANGVYPTQ SSTSSHSISP ISGSPLSQND SHSYHTYDSP PTASCVTEIP DFQSKLKELE NAILGPELDI
101: ASDSPESLLQ ANHPLKQDNW RQLLGIDTGD LKQVIIACGK AVAANDMYAT ELLISELGQL VSVSGDPMQR LGAYMLEGLV ARLSFSGSKL YKSLKCKEPT
201: GSELMSYMHL LCEICPFYKF GYMSANGAIA EAIKGENFIH IIDFQIAQGS QWITIIQALA ARPGGPPFLR ITGIDDSNSA YARGGGLDMV GTKLHSVSAS
301: CGLPFEFNAV RAASHEVYIQ HLDIRPGEAI VVNFAYQLHH TPDESVSVEN HRDRIARMIK SLSPRVVTLV EQESNTNTSA FLPRYLETLD YYMAMFESID
401: VALPRDDKRR ISTEQHCVAR DIVNLIACEG AERVERHEVF GKWKARFAMA GFRPYPLSSV VNNTIKTLLD SYHSCYRLEE RDGVLYLGWK SRVLVVSSAW
501: C

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.