Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42968 | Canola | cytosol | 97.55 | 96.82 |
| AT4G17230.1 | Thale cress | cytosol | 88.7 | 89.04 |
| CDY50128 | Canola | cytosol, plastid | 89.27 | 88.93 |
| CDY58168 | Canola | plastid | 88.51 | 88.68 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 59.7 | 58.17 |
| KRH51175 | Soybean | cytosol | 59.13 | 57.93 |
| KRH01979 | Soybean | cytosol | 58.95 | 57.43 |
| KRH36572 | Soybean | cytosol | 58.95 | 57.12 |
| KRH11548 | Soybean | nucleus | 58.76 | 56.52 |
| PGSC0003DMT400034763 | Potato | cytosol | 55.93 | 55.62 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 56.69 | 55.54 |
| PGSC0003DMT400060553 | Potato | cytosol | 53.48 | 54.2 |
| PGSC0003DMT400021748 | Potato | nucleus | 56.69 | 53.85 |
| CDY07309 | Canola | cytosol | 23.54 | 52.08 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 54.24 | 52.08 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 32.02 | 51.83 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 40.87 | 50.94 |
| CDY00883 | Canola | cytosol | 38.79 | 50.86 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 47.83 | 50.7 |
| CDY71156 | Canola | cytosol, plastid | 37.1 | 50.51 |
| CDY37124 | Canola | nucleus | 39.74 | 50.24 |
| CDY22807 | Canola | nucleus | 39.74 | 50.24 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 44.63 | 47.69 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 35.59 | 47.61 |
| Os03t0193000-01 | Rice | plastid | 47.65 | 47.29 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 44.26 | 47.28 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 48.96 | 47.27 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 47.46 | 47.01 |
| CDY19966 | Canola | cytosol | 43.69 | 46.96 |
| CDY00074 | Canola | cytosol, plastid | 43.88 | 46.88 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 43.13 | 46.83 |
| CDY71174 | Canola | cytosol, plastid | 43.69 | 46.68 |
| EER95348 | Sorghum | cytosol | 47.08 | 46.64 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 48.59 | 46.57 |
| Os07t0583600-01 | Rice | plasma membrane | 47.65 | 46.51 |
| CDY05700 | Canola | cytosol, plastid | 43.5 | 46.48 |
| Zm00001d006701_P001 | Maize | cytosol | 48.4 | 46.39 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 46.7 | 46.27 |
| Zm00001d030500_P001 | Maize | nucleus | 47.08 | 46.13 |
| EER97449 | Sorghum | cytosol | 47.46 | 46.07 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 48.21 | 45.96 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 48.02 | 45.95 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 46.33 | 45.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.91 | 45.79 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 47.65 | 45.67 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 46.14 | 45.62 |
| Zm00001d021946_P001 | Maize | cytosol | 47.46 | 45.16 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 26.37 | 42.04 |
| HORVU5Hr1G099160.1 | Barley | plastid | 48.21 | 40.63 |
| CDY61060 | Canola | cytosol | 38.61 | 38.03 |
| CDY00377 | Canola | cytosol | 38.98 | 37.64 |
| CDY68224 | Canola | cytosol | 38.79 | 35.76 |
| CDY50240 | Canola | cytosol | 38.61 | 35.59 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 18.27 | 30.6 |
| CDY27821 | Canola | cytosol | 25.05 | 29.95 |
| CDY00533 | Canola | cytosol | 24.67 | 29.37 |
| CDX68389 | Canola | cytosol | 4.52 | 28.24 |
| CDY27063 | Canola | cytosol, plastid | 25.99 | 23.96 |
| CDY71578 | Canola | nucleus, plastid | 23.35 | 23.8 |
| CDX91655 | Canola | cytosol | 25.61 | 23.13 |
| CDY33040 | Canola | nucleus | 24.11 | 21.44 |
| CDY39530 | Canola | cytosol | 24.86 | 21.32 |
| CDY47877 | Canola | nucleus | 24.67 | 21.2 |
| CDY47878 | Canola | nucleus | 26.93 | 20.69 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 26.18 | 20.65 |
| CDX79750 | Canola | peroxisome | 26.18 | 20.62 |
| CDX68388 | Canola | cytosol | 15.63 | 20.05 |
| CDY06266 | Canola | cytosol | 23.73 | 19.94 |
| CDX86475 | Canola | nucleus | 26.55 | 19.86 |
| CDX82987 | Canola | nucleus | 22.22 | 19.63 |
| CDY15616 | Canola | nucleus | 26.37 | 19.58 |
| CDX77228 | Canola | cytosol | 23.16 | 18.3 |
| CDY31749 | Canola | cytosol | 24.86 | 18.18 |
| CDY06265 | Canola | cytosol | 23.16 | 17.83 |
| CDY09912 | Canola | cytosol | 23.35 | 17.71 |
| CDY09911 | Canola | nucleus | 17.89 | 16.27 |
Protein Annotations
| EnsemblPlants:CDY35589 | EnsemblPlantsGene:GSBRNA2T00058940001 | GO:A0A078HDU7 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:Scarecrow-like_13 |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF45 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDY35589 |
| ProteinID:CDY35589.1 | SEG:seg | UniParc:UPI0004EE6F59 | UniProt:A0A078HDU7 | MapMan:15.5.12 | : |
Description
BnaC01g21110DBnaC01g21110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDU7]
Coordinates
chrLK032356:+:55827..58544
Molecular Weight (calculated)
58806.0 Da
IEP (calculated)
6.368
GRAVY (calculated)
-0.259
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTSQKHHSA AGLHMLYPQV HCSPQFQVID NKKGFSDTPS KESFFTLESS TASGPLPSYE SPSVSITSGR SPFSPQASCI SDLHPSPENI YGSPLSGASS
101: HVYDEAHVKN KIRELEVSLL SVDPKVEEYS GFSPAAGKSW NWDELLALTP QLDLKEVLVE AARAVSEGDF AAACGFIDVL EQMVSVSGTP IQRLGTYMAE
201: GLRARLQGTG GNIYRALKCN EPTGRELMSY MGVLYEICPY WKFAYNAANA AIFEAVAGEK RVHIIDFQIA QGSQYMFLIN ELAKRPGGPP LLRVTGVDDS
301: QSRYARGGGL SLIGEKLADM AQSRGVPFEF HDAIMSGCKV HREHLGVEPG FAVVVNFPYV LHHMPDESVS VENHRDRLLH LIKSLGPKLV TLVEQESNTN
401: TSPFLSRFVE TLDYYTAMFE SIDAARPRDD KQRISAEQHC VARDIVNMIA CEEAERVERH EVLGKWRVRM MMAGFMGWPV SSSAAFAASE MLKGYDKNYK
501: LGESEGALYL FWKRRPMATC SAWKPNPNQI V
101: HVYDEAHVKN KIRELEVSLL SVDPKVEEYS GFSPAAGKSW NWDELLALTP QLDLKEVLVE AARAVSEGDF AAACGFIDVL EQMVSVSGTP IQRLGTYMAE
201: GLRARLQGTG GNIYRALKCN EPTGRELMSY MGVLYEICPY WKFAYNAANA AIFEAVAGEK RVHIIDFQIA QGSQYMFLIN ELAKRPGGPP LLRVTGVDDS
301: QSRYARGGGL SLIGEKLADM AQSRGVPFEF HDAIMSGCKV HREHLGVEPG FAVVVNFPYV LHHMPDESVS VENHRDRLLH LIKSLGPKLV TLVEQESNTN
401: TSPFLSRFVE TLDYYTAMFE SIDAARPRDD KQRISAEQHC VARDIVNMIA CEEAERVERH EVLGKWRVRM MMAGFMGWPV SSSAAFAASE MLKGYDKNYK
501: LGESEGALYL FWKRRPMATC SAWKPNPNQI V
001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN
Arabidopsis Description
SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.