Factsheet for PGSC0003DMT400021748

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	55.99	93.99
PGSC0003DMT400034763	Potato	cytosol	71.2	74.53
PGSC0003DMT400060553	Potato	cytosol	64.76	69.08
VIT_00s0463g00020.t01	Wine grape	nucleus	64.94	66.61
KRH01979	Soybean	cytosol	60.47	62.02
KRH51175	Soybean	cytosol	60.11	61.99
KRH11548	Soybean	nucleus	60.82	61.59
KRH36572	Soybean	cytosol	59.75	60.95
AT4G17230.1	Thale cress	cytosol	56.17	59.36
GSMUA_Achr4P07010_001	Banana	cytosol	34.17	58.23
CDY35589	Canola	cytosol	53.85	56.69
Bra021063.1-P	Field mustard	plastid	53.67	56.6
CDY58168	Canola	plastid	53.67	56.6
CDY42968	Canola	cytosol	54.02	56.45
Bra026237.1-P	Field mustard	plastid	53.85	56.26
CDY50128	Canola	cytosol, plastid	53.49	56.1
TraesCS5A01G414000.1	Wheat	cytosol	40.97	53.76
PGSC0003DMT400015696	Potato	cytosol	50.8	53.08
TraesCS5A01G409800.1	Wheat	nucleus, plastid	47.05	52.49
GSMUA_Achr4P11050_001	Banana	nucleus	36.31	51.13
Os07t0583600-01	Rice	plasma membrane	49.2	50.55
Os03t0193000-01	Rice	plastid	47.76	49.91
EER95348	Sorghum	cytosol	47.59	49.63
Zm00001d048199_P001	Maize	mitochondrion, nucleus	47.59	49.63
GSMUA_AchrUn_...	Banana	nucleus	37.92	49.53
Zm00001d030500_P001	Maize	nucleus	47.94	49.45
PGSC0003DMT400057111	Potato	nucleus	47.41	49.35
TraesCS2B01G217500.1	Wheat	cytosol	48.84	49.28
EER97449	Sorghum	cytosol	48.12	49.18
TraesCS4D01G266400.1	Wheat	cytosol	46.87	48.88
TraesCS4A01G039000.1	Wheat	nucleus	42.75	48.88
HORVU4Hr1G071670.1	Barley	cytosol	46.69	48.69
TraesCS2A01G189600.1	Wheat	cytosol	48.12	48.56
TraesCS5D01G419400.2	Wheat	cytosol	47.76	48.55
HORVU2Hr1G036280.1	Barley	cytosol	48.3	48.47
TraesCS2D01G198200.1	Wheat	cytosol	48.12	48.47
TraesCS4B01G266700.1	Wheat	cytosol	46.33	48.23
Zm00001d006701_P001	Maize	cytosol	47.76	48.19
Zm00001d021946_P001	Maize	cytosol	46.69	46.77
HORVU5Hr1G099160.1	Barley	plastid	46.87	41.59
PGSC0003DMT400056120	Potato	cytosol	41.14	41.14
PGSC0003DMT400049492	Potato	cytosol	41.5	39.86
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	37.92	37.92
PGSC0003DMT400005480	Potato	cytosol	22.9	26.28
PGSC0003DMT400076932	Potato	nucleus	27.55	25.41
PGSC0003DMT400026240	Potato	nucleus, plastid	27.01	23.09
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	24.33	21.05
PGSC0003DMT400016258	Potato	cytosol	26.3	20.19
PGSC0003DMT400078286	Potato	nucleus	23.97	20.09
PGSC0003DMT400077972	Potato	cytosol	27.01	20.08
PGSC0003DMT400049420	Potato	cytosol	23.61	19.88
PGSC0003DMT400069949	Potato	cytosol	25.76	19.28
PGSC0003DMT400022997	Potato	cytosol, plastid	25.04	18.4

Protein Annotations

EntrezGene:102590638	MapMan:15.5.12	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	UniProt:M1AFN3	PFAM:PF03514
EnsemblPlantsGene:PGSC0003DMG400008442	PGSC:PGSC0003DMG400008442	EnsemblPlants:PGSC0003DMT400021748	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF45
InterPro:Scarecrow-like_13	InterPro:TF_GRAS	UniParc:UPI000295D603	RefSeq:XP_006365847.1	RefSeq:XP_006365848.1	SEG:seg

Description

SCL domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400008442]

Coordinates

chr5:-:49804042..49813842

Molecular Weight (calculated)

61719.5 Da

IEP (calculated)

5.877

GRAVY (calculated)

-0.328

Length

559 amino acids

Sequence
(BLAST)

001: MHTSQIPQSS GGVHKLCHQP TTNFEQYYSP YHVVNNNSSD TSSSGTQLSY QTQNEKFFTL DSLPDAGYVS YDSPPAVSVS SNWSPFSPQC SQSYISDQHH
101: SSDNTYGSPL SGCSVINDGN ELKHVLREMA NNLLGPGSDI DEDSSCSFNG EVSKPSKWNR VLEIAPSLDM KELLLACAEA ISDVEVTARD AQMNVLGQKV
201: SDADVTARDV LINVLEQKVS VSGEPMQRLS AYMLEGLKAR IYSSGSTIYK MLKCKEPTGS ELISYMQVLY HICPYYRFAY TSANVVIEEA MRNESRIHII
301: DFQIAQGSQW VFLMQNLAHW PGGPPSVHIT GVDDSQSAHA RGGGLHLVGE RLAKAAESCG VPFEFHAAAI SGCEVQLENL QIRHGEALAV NFPYVLHHMP
401: DESVTTANHR DRLLRLVKSL SPKIVTLVEQ ESNTNTSAFL PRFRETLDYY TAMFESIDAG RPGDDKQRIN AEAHCVARDI VNIIACEGSD RVERHEVFGK
501: WSMRLTMAGF TPCPLSPSVG EAINGVLKEF SPNYRIAENK GALYLGWKNR ALATSSAWR

Best Arabidopsis Sequence Match ( AT4G17230.2 )
(BLAST)

001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN

Arabidopsis Description

SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.