Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 95.15 | 95.15 |
| Os03t0193000-01 | Rice | plastid | 79.66 | 79.81 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 75.0 | 75.0 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 74.81 | 74.81 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 67.91 | 74.44 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 74.44 | 74.3 |
| Bra026077.1-P | Field mustard | cytosol | 35.45 | 64.63 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 39.37 | 64.33 |
| Bra015156.1-P | Field mustard | cytosol | 36.57 | 61.64 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 44.03 | 59.45 |
| CDY00883 | Canola | cytosol | 44.03 | 58.27 |
| AT2G04890.1 | Thale cress | cytosol | 44.59 | 57.87 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 58.21 | 57.25 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.78 | 56.07 |
| AT5G48150.4 | Thale cress | cytosol | 50.75 | 55.51 |
| CDY71156 | Canola | cytosol, plastid | 40.3 | 55.38 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 51.31 | 55.33 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 51.12 | 55.13 |
| CDY05700 | Canola | cytosol, plastid | 50.93 | 54.93 |
| PGSC0003DMT400015696 | Potato | cytosol | 54.66 | 54.77 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 50.75 | 54.73 |
| CDY71174 | Canola | cytosol, plastid | 50.75 | 54.73 |
| KRH14104 | Soybean | cytosol | 55.6 | 54.68 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 55.6 | 54.68 |
| CDY07309 | Canola | cytosol | 24.44 | 54.58 |
| KRH74015 | Soybean | cytosol | 55.04 | 54.53 |
| CDY19966 | Canola | cytosol | 50.0 | 54.25 |
| EER97449 | Sorghum | cytosol | 55.22 | 54.11 |
| CDY00074 | Canola | cytosol, plastid | 50.0 | 53.92 |
| CDY22807 | Canola | nucleus | 42.16 | 53.81 |
| CDY37124 | Canola | nucleus | 42.16 | 53.81 |
| Bra036185.1-P | Field mustard | cytosol | 49.63 | 53.74 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 53.36 | 52.48 |
| PGSC0003DMT400057111 | Potato | nucleus | 51.68 | 51.58 |
| PGSC0003DMT400060553 | Potato | cytosol | 50.37 | 51.53 |
| Bra018860.1-P | Field mustard | nucleus | 50.37 | 51.43 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 52.24 | 51.38 |
| Solyc07g065270.1.1 | Tomato | nucleus | 51.49 | 51.3 |
| PGSC0003DMT400034763 | Potato | cytosol | 50.93 | 51.12 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 51.31 | 50.74 |
| KRH51175 | Soybean | cytosol | 50.19 | 49.63 |
| KRG98562 | Soybean | nucleus | 50.37 | 49.54 |
| KRH01979 | Soybean | cytosol | 50.0 | 49.17 |
| KRH73868 | Soybean | cytosol | 50.0 | 49.17 |
| KRH14274 | Soybean | cytosol | 49.81 | 48.99 |
| KRH46306 | Soybean | cytosol | 49.81 | 48.99 |
| KRH11548 | Soybean | nucleus | 50.37 | 48.91 |
| KRH36572 | Soybean | cytosol | 49.81 | 48.72 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 50.19 | 48.64 |
| PGSC0003DMT400021748 | Potato | nucleus | 49.63 | 47.59 |
| Bra021063.1-P | Field mustard | plastid | 47.01 | 47.55 |
| CDY58168 | Canola | plastid | 47.01 | 47.55 |
| AT4G17230.1 | Thale cress | cytosol | 46.83 | 47.45 |
| CDY35589 | Canola | cytosol | 46.64 | 47.08 |
| CDY50128 | Canola | cytosol, plastid | 46.64 | 46.9 |
| Bra026237.1-P | Field mustard | plastid | 46.46 | 46.54 |
| CDY42968 | Canola | cytosol | 46.46 | 46.54 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 50.37 | 44.93 |
| EER97346 | Sorghum | cytosol | 44.78 | 42.11 |
| KRH38269 | Soybean | cytosol | 27.43 | 41.64 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 22.39 | 36.04 |
| KXG33821 | Sorghum | cytosol | 38.25 | 36.03 |
| EES18257 | Sorghum | cytosol | 37.31 | 35.52 |
| EES05727 | Sorghum | cytosol | 28.54 | 24.32 |
| OQU84115 | Sorghum | cytosol | 20.71 | 22.79 |
| OQU83981 | Sorghum | cytosol | 19.78 | 21.33 |
| KXG21079 | Sorghum | cytosol | 24.25 | 20.87 |
| EES12703 | Sorghum | cytosol, nucleus, plastid | 25.37 | 20.86 |
| OQU84120 | Sorghum | nucleus | 24.63 | 20.82 |
| OQU84113 | Sorghum | cytosol, nucleus, plastid | 24.63 | 20.66 |
| OQU84119 | Sorghum | cytosol, extracellular, mitochondrion, plastid | 24.44 | 20.63 |
| KXG21080 | Sorghum | cytosol | 24.07 | 20.61 |
| KXG37250 | Sorghum | cytosol | 24.81 | 20.43 |
| KXG38103 | Sorghum | cytosol | 23.69 | 20.29 |
| OQU83979 | Sorghum | plastid | 22.57 | 19.93 |
| KXG26392 | Sorghum | cytosol | 23.51 | 19.87 |
| OQU84116 | Sorghum | nucleus | 22.95 | 19.87 |
| KXG29228 | Sorghum | cytosol | 22.76 | 19.71 |
| OQU84111 | Sorghum | cytosol | 24.07 | 19.14 |
| KXG29232 | Sorghum | cytosol | 24.25 | 19.12 |
| OQU83978 | Sorghum | mitochondrion | 22.39 | 18.96 |
| KXG29219 | Sorghum | cytosol | 24.25 | 18.87 |
| EES16206 | Sorghum | cytosol | 25.56 | 18.77 |
| OQU84112 | Sorghum | cytosol | 25.0 | 18.69 |
| OQU83980 | Sorghum | cytosol | 21.46 | 18.52 |
| OQU92829 | Sorghum | cytosol | 25.19 | 18.39 |
| KXG29223 | Sorghum | cytosol | 24.25 | 18.28 |
| OQU91407 | Sorghum | nucleus | 23.32 | 18.22 |
| KXG38064 | Sorghum | nucleus | 24.25 | 18.06 |
| OQU84105 | Sorghum | cytosol | 24.44 | 17.95 |
| OQU84114 | Sorghum | mitochondrion | 15.86 | 17.75 |
| OQU81651 | Sorghum | cytosol | 22.95 | 17.57 |
| KXG29224 | Sorghum | nucleus | 22.57 | 17.46 |
| EES18882 | Sorghum | cytosol | 23.51 | 17.19 |
| EES09053 | Sorghum | cytosol | 20.34 | 17.03 |
| EER91260 | Sorghum | nucleus | 22.76 | 16.92 |
| EES18880 | Sorghum | cytosol | 23.32 | 16.87 |
| OQU90003 | Sorghum | cytosol | 23.88 | 16.58 |
| OQU91406 | Sorghum | nucleus | 22.95 | 16.44 |
| EES01740 | Sorghum | cytosol | 23.69 | 15.74 |
| OQU84106 | Sorghum | cytosol, endoplasmic reticulum, plastid | 23.32 | 15.53 |
| KXG36217 | Sorghum | cytosol | 23.13 | 14.94 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:8054264 | UniProt:C5WUR2 | InterPro:CIGR2 | ncoils:Coil | EnsemblPlants:EER95348 |
| ProteinID:EER95348 | ProteinID:EER95348.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF31 |
| EnsemblPlantsGene:SORBI_3001G472600 | unigene:Sbi.2047 | InterPro:TF_GRAS | UniParc:UPI0001A82E04 | RefSeq:XP_002468350.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:-:74490882..74499055
Molecular Weight (calculated)
59781.6 Da
IEP (calculated)
6.255
GRAVY (calculated)
-0.319
Length
536 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTQASNRSY RYPDNTQLLY HNGNPMHVGG NGNYYVQQNH DDVNYISSDD GSQSSNSRAQ GFQAQFCTLD SSSANCVYPA HSSTSSQSIS GSPLSQQESH
101: SDHAYGSSPS ASCITQVPTW TLKDLENVML GPDSDICSPD SSFLPGTALH ENNWRELLGI QTGDLRQLII ACGKAVDENA FYMDALMSEL RPMVSVSGEP
201: MQRLGAYMLE GLIARLSFTG HALYKSLKCK EPVATSSELM SYMHLLYEIC PFFKFGYMSA NGAIADAVKG EDIIHIIDFQ IAQGSQWMTM IHALASRPGR
301: RPYLRITGID DSNSAHARGG GLDMVGQRLH TVAQSCGLPF EFNAVPAASH EVVFEDLCVR PGEAIVVNFA YQLHHTPDES VGTENHRDRI LRMVKSLSPR
401: VVTLVEQEAN TNTAPFFLRY METLDYYTAM FEAIDVACPR DDKKRISTEQ HCVARDIVNL IACEGTERIE RHEPFGKWRA RLAMAGFRPY PLSPVVNRTI
501: KTLLDSYHSY YRLEERDGIL YLGWKNRKLV VSSAWC
101: SDHAYGSSPS ASCITQVPTW TLKDLENVML GPDSDICSPD SSFLPGTALH ENNWRELLGI QTGDLRQLII ACGKAVDENA FYMDALMSEL RPMVSVSGEP
201: MQRLGAYMLE GLIARLSFTG HALYKSLKCK EPVATSSELM SYMHLLYEIC PFFKFGYMSA NGAIADAVKG EDIIHIIDFQ IAQGSQWMTM IHALASRPGR
301: RPYLRITGID DSNSAHARGG GLDMVGQRLH TVAQSCGLPF EFNAVPAASH EVVFEDLCVR PGEAIVVNFA YQLHHTPDES VGTENHRDRI LRMVKSLSPR
401: VVTLVEQEAN TNTAPFFLRY METLDYYTAM FEAIDVACPR DDKKRISTEQ HCVARDIVNL IACEGTERIE RHEPFGKWRA RLAMAGFRPY PLSPVVNRTI
501: KTLLDSYHSY YRLEERDGIL YLGWKNRKLV VSSAWC
001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
Arabidopsis Description
PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.