CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048601_P001	Maize	cytosol	78.4	78.04
TraesCS4A01G176400.1	Wheat	cytosol	50.7	65.06
Os11t0705900-01	Rice	cytosol	58.06	57.79
TraesCS4D01G136300.1	Wheat	cytosol	59.31	56.23
TraesCS4B01G141300.1	Wheat	cytosol	58.69	55.64
HORVU4Hr1G027900.1	Barley	cytosol	57.59	55.59
TraesCS4B01G141400.1	Wheat	cytosol	57.43	55.52
HORVU4Hr1G027610.1	Barley	cytosol	58.53	55.24
TraesCS4A01G176300.1	Wheat	cytosol	57.43	54.37
TraesCS4D01G136400.1	Wheat	mitochondrion	57.43	51.54
OQU84115	Sorghum	cytosol	36.93	48.46
OQU84111	Sorghum	cytosol	49.45	46.88
KXG29219	Sorghum	cytosol	49.77	46.15
OQU84105	Sorghum	cytosol	52.27	45.75
OQU84116	Sorghum	nucleus	44.29	45.72
KXG26392	Sorghum	cytosol	44.6	44.95
OQU83981	Sorghum	cytosol	34.9	44.87
EES09053	Sorghum	cytosol	44.76	44.69
OQU84120	Sorghum	nucleus	44.13	44.48
KXG29232	Sorghum	cytosol	46.79	43.97
OQU84112	Sorghum	cytosol	49.3	43.93
OQU83979	Sorghum	plastid	41.0	43.16
EES16206	Sorghum	cytosol	49.3	43.15
OQU84114	Sorghum	mitochondrion	32.24	43.01
OQU83980	Sorghum	cytosol	41.78	43.0
KXG29228	Sorghum	cytosol	41.31	42.65
KXG29224	Sorghum	nucleus	45.54	41.99
KXG29223	Sorghum	cytosol	46.17	41.49
OQU90003	Sorghum	cytosol	50.08	41.45
OQU84119	Sorghum	cytosol, extracellular, mitochondrion, plastid	41.16	41.42
GSMUA_Achr5P08320_001	Banana	cytosol	28.95	41.2
KXG36217	Sorghum	cytosol	53.36	41.08
OQU83978	Sorghum	mitochondrion	39.44	39.81
OQU84106	Sorghum	cytosol, endoplasmic reticulum, plastid	48.83	38.76
KXG37250	Sorghum	cytosol	37.72	37.02
OQU81651	Sorghum	cytosol	40.38	36.86
KXG21079	Sorghum	cytosol	35.05	35.96
KXG38103	Sorghum	cytosol	34.9	35.62
OQU92829	Sorghum	cytosol	40.69	35.42
KXG21080	Sorghum	cytosol	34.59	35.3
EES01740	Sorghum	cytosol	39.28	31.1
EER91260	Sorghum	nucleus	33.8	29.96
OQU91407	Sorghum	nucleus	31.92	29.74
EES18882	Sorghum	cytosol	32.71	28.51
EES18880	Sorghum	cytosol	33.02	28.48
KXG38064	Sorghum	nucleus	32.08	28.47
OQU91406	Sorghum	nucleus	32.71	27.94
EER97449	Sorghum	cytosol	22.07	25.78
EER95348	Sorghum	cytosol	20.66	24.63
EER97346	Sorghum	cytosol	20.66	23.16
EES18257	Sorghum	cytosol	20.03	22.74
KXG33821	Sorghum	cytosol	19.87	22.32
EES05727	Sorghum	cytosol	18.94	19.24
EES12703	Sorghum	cytosol, nucleus, plastid	17.84	17.48

Protein Annotations

MapMan:15.5.12	EntrezGene:8076379	UniProt:A0A1Z5RK46	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	EnsemblPlants:OQU84113
ProteinID:OQU84113	ProteinID:OQU84113.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF20
EnsemblPlantsGene:SORBI_3005G230300	InterPro:TF_GRAS	UniParc:UPI0001A86850	RefSeq:XP_002450069.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:71695455..71697374

Molecular Weight (calculated)

71137.4 Da

IEP (calculated)

6.819

GRAVY (calculated)

-0.402

Length

639 amino acids

Sequence
(BLAST)

001: MAAAPLPPDD LFLVHPDPPS PSVFLDLPPA PPNDDDDMVL PYISHLLMEE EDAHAESFFY QYPDHPALLH AQQPFADILA DVSSASASAT TSPSDDSDHS
101: PTGNGRDANA ADMATSAFLK GMQEATNLLP SVLSTNNSTL LLNHACKNSH AAARDDDGDP DPESRRAAKL MLPAEPADEA DARRMFDQLM IHERDDICIK
201: MKGVPQHQQQ GQGVDDDNPT QRRRRLRRRR STSTTSTDTV VDLHALLLRC AQAVATDDRA AAQDLLAHIR RHSSATGDAA QRMAHCFAEG LEARLAGTGS
301: RLYRSLMLRR TSVADFLRAY RLYMAACCCK KVAFTFSNKT IHDAVAVAGG ASSRRRRRLH IVDYGLGYGF QWPGLLRSLA VMEGGPPELV RITGIDLPQP
401: GFRPARQIED TGRRLSDCAR QLGVPFAFRG IAAKREDVSP EDLHIDPAAE VLVVISLCHF RLLADEIDII SGAAVAGPGR RRRPSPRDEV LGNIRRMRPD
501: VFIHGVVSGG YGTTYFPTRF REAMFYYSAQ FDLLDATVPR DSPERLLLER DIFGRAAMNV VACEGTDRVE RPETYRQWQV RNQRAGLRQL PLEPHVVKVV
601: MDKVKDNYHR DFVVDEDQRW LLHRWKGRVL YGLSTWVAC

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.