CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
extracellular 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007248_P001	Maize	cytosol, endoplasmic reticulum, nucleus	62.05	72.83
OQU83981	Sorghum	cytosol	44.72	57.14
OQU83979	Sorghum	plastid	52.76	55.19
OQU84115	Sorghum	cytosol	41.89	54.62
OQU83980	Sorghum	cytosol	53.23	54.43
KXG29228	Sorghum	cytosol	51.97	53.31
OQU83978	Sorghum	mitochondrion	51.5	51.66
Os11t0706200-00	Rice	nucleus	45.04	48.23
OQU81651	Sorghum	cytosol	47.72	43.29
OQU84113	Sorghum	cytosol, nucleus, plastid	41.42	41.16
KXG29219	Sorghum	cytosol	44.25	40.78
OQU84111	Sorghum	cytosol	43.15	40.65
OQU84114	Sorghum	mitochondrion	30.39	40.29
OQU84116	Sorghum	nucleus	38.9	39.9
OQU84120	Sorghum	nucleus	38.74	38.8
KXG26392	Sorghum	cytosol	38.74	38.8
EES09053	Sorghum	cytosol	38.9	38.59
OQU84105	Sorghum	cytosol	43.78	38.08
OQU84112	Sorghum	cytosol	42.99	38.08
KXG29232	Sorghum	cytosol	40.31	37.65
EES16206	Sorghum	cytosol	43.15	37.53
GSMUA_Achr5P08320_001	Banana	cytosol	26.3	37.19
KXG29223	Sorghum	cytosol	40.63	36.29
KXG29224	Sorghum	nucleus	38.74	35.5
OQU84106	Sorghum	cytosol, endoplasmic reticulum, plastid	43.62	34.41
OQU90003	Sorghum	cytosol	41.26	33.94
KXG36217	Sorghum	cytosol	43.94	33.61
KXG38103	Sorghum	cytosol	31.5	31.95
KXG21079	Sorghum	cytosol	30.87	31.46
KXG37250	Sorghum	cytosol	31.18	30.41
KXG21080	Sorghum	cytosol	29.76	30.19
OQU92829	Sorghum	cytosol	34.65	29.97
EES01740	Sorghum	cytosol	36.38	28.62
OQU91407	Sorghum	nucleus	30.39	28.13
EES18882	Sorghum	cytosol	31.34	27.15
EER91260	Sorghum	nucleus	30.08	26.49
KXG38064	Sorghum	nucleus	29.61	26.11
EES18880	Sorghum	cytosol	30.08	25.78
OQU91406	Sorghum	nucleus	30.24	25.67
EER97449	Sorghum	cytosol	21.26	24.68
EER95348	Sorghum	cytosol	20.63	24.44
EER97346	Sorghum	cytosol	18.9	21.05
KXG33821	Sorghum	cytosol	18.11	20.21
EES18257	Sorghum	cytosol	17.48	19.72
EES05727	Sorghum	cytosol	17.17	17.33
EES12703	Sorghum	cytosol, nucleus, plastid	16.06	15.64

Protein Annotations

EnsemblPlants:OQU84119	EnsemblPlantsGene:SORBI_3005G230800	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF41	PFAM:PF03514	PFscan:PS50985	ProteinID:OQU84119	ProteinID:OQU84119.1	SEG:seg
UniParc:UPI000B8BAC40	UniProt:A0A1Z5RKL5	MapMan:15.5.12	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:71713937..71716993

Molecular Weight (calculated)

71956.7 Da

IEP (calculated)

6.944

GRAVY (calculated)

-0.341

Length

635 amino acids

Sequence
(BLAST)

001: MAILKMIIRV YQIKEEFFVK DSMAQSPLSP SHEVFPRNPK QEAGGRSEGC HHHVPSDMMM LPYISRMLME DEDDTDDKLL SDHPALLQVE QPFAQILSSP
101: SPGDTNDGGG GDERSTPSYS SLSRCPYAVV GEFLKGMDQA TNMLLPGAGG FICDDELQVN QTAARESRSK KRNNRDDHNL QDEVITRSSK AVMTIKQQHE
201: DICVHETMLE DMMSSGLETY IREFEKLRVD MANEAHQKNI RKGGKKAVVS NNVVDVSSLL ISCAQAVAAN DHVRARDLLK QIKQHASETG DATQRLAHCF
301: ARGLEARLLG MGSQLWQLVL AERLSIEEFL KAQNLYMAAC SFNKVVICFS TMTILQAIQG KTRLHIVDYG MRFGFHWAHL LRLLASREGG PPKVRITAIL
401: RSRLRPCPAE LIEDTGRRLI KCAHDSGVPF SFHVIRKKWE EVCNEDLDKH PDEVLVVNDH FNFSTLMDES IFFDNPSPRD TVLHNINKMM PDVFIQSILN
501: SSYGCSYLSR FKEALFYYTA MFDMFDATMP RGSKPRMVLE QGLFGRAAVN VIACEGIDLL ERPEKYRQWQ ARNQRAGLRQ LPLQPKIVHT LKEEIRMCHH
601: KDLLICQDGH WLLQGWMGRI LFGLSTWVAQ GSSSE

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.