CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26392	Sorghum	cytosol	53.0	53.0
TraesCS4B01G140800.1	Wheat	cytosol	48.9	52.45
TraesCS4B01G336200.1	Wheat	cytosol	48.27	52.4
TraesCS4D01G135900.1	Wheat	cytosol	52.52	52.19
TraesCS5A01G506000.1	Wheat	cytosol	48.42	50.83
TraesCS5A01G506100.1	Wheat	cytosol	51.42	50.7
TraesCS4D01G135500.1	Wheat	cytosol	51.1	50.15
TraesCS4A01G177100.1	Wheat	nucleus	50.79	50.08
TraesCS4A01G176700.1	Wheat	cytosol	52.52	49.92
TraesCS4D01G332000.1	Wheat	cytosol	51.42	48.3
KXG29232	Sorghum	cytosol	50.47	47.06
HORVU4Hr1G027480.1	Barley	endoplasmic reticulum, extracellular, plasma membrane	52.21	46.82
OQU84115	Sorghum	cytosol	35.02	45.59
OQU84113	Sorghum	cytosol, nucleus, plastid	44.48	44.13
OQU84111	Sorghum	cytosol	46.85	44.07
OQU84116	Sorghum	nucleus	41.8	42.81
KXG29219	Sorghum	cytosol	46.37	42.67
OQU83981	Sorghum	cytosol	33.44	42.66
OQU84105	Sorghum	cytosol	48.58	42.19
OQU84114	Sorghum	mitochondrion	31.55	41.75
EES09053	Sorghum	cytosol	41.17	40.78
GSMUA_Achr5P08320_001	Banana	cytosol	28.86	40.76
KXG29228	Sorghum	cytosol	39.59	40.55
OQU84112	Sorghum	cytosol	45.58	40.31
KXG29224	Sorghum	nucleus	42.59	38.96
OQU83980	Sorghum	cytosol	38.01	38.81
OQU84119	Sorghum	cytosol, extracellular, mitochondrion, plastid	38.8	38.74
OQU83979	Sorghum	plastid	36.91	38.55
EES16206	Sorghum	cytosol	44.32	38.49
KXG29223	Sorghum	cytosol	43.06	38.4
OQU90003	Sorghum	cytosol	46.69	38.34
OQU83978	Sorghum	mitochondrion	38.01	38.07
OQU84106	Sorghum	cytosol, endoplasmic reticulum, plastid	45.58	35.9
OQU81651	Sorghum	cytosol	39.27	35.57
KXG36217	Sorghum	cytosol	46.53	35.54
KXG38103	Sorghum	cytosol	34.86	35.3
KXG21079	Sorghum	cytosol	34.07	34.67
KXG37250	Sorghum	cytosol	35.02	34.1
OQU92829	Sorghum	cytosol	39.12	33.79
KXG21080	Sorghum	cytosol	32.65	33.07
EES01740	Sorghum	cytosol	39.12	30.73
OQU91407	Sorghum	nucleus	33.12	30.61
EER91260	Sorghum	nucleus	33.75	29.68
KXG38064	Sorghum	nucleus	33.6	29.58
OQU91406	Sorghum	nucleus	32.97	27.94
EES18882	Sorghum	cytosol	31.7	27.42
EES18880	Sorghum	cytosol	31.39	26.86
EER97449	Sorghum	cytosol	21.77	25.23
EER95348	Sorghum	cytosol	20.82	24.63
EER97346	Sorghum	cytosol	20.5	22.81
KXG33821	Sorghum	cytosol	19.72	21.97
EES18257	Sorghum	cytosol	19.09	21.49
EES05727	Sorghum	cytosol	18.93	19.08
EES12703	Sorghum	cytosol, nucleus, plastid	17.82	17.33

Protein Annotations

EnsemblPlants:OQU84120	EnsemblPlantsGene:SORBI_3005G230900	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF27	PFAM:PF03514	PFscan:PS50985	ProteinID:OQU84120	ProteinID:OQU84120.1	SEG:seg
UniParc:UPI000B424ABB	UniProt:A0A1Z5RK52	MapMan:15.5.12	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:71726492..71728396

Molecular Weight (calculated)

70918.6 Da

IEP (calculated)

5.367

GRAVY (calculated)

-0.364

Length

634 amino acids

Sequence
(BLAST)

001: MEATPTPPSP TTVFLELQPP TACGMLMEKD SSSAHQDNDL VLPYISRLLM EDDIADKLFF QQYDLDEPAL LEAQQPFIEI ISNAVVVPSR PCNNNYSGQP
101: LVAPAPYTGT AESMAETNSL LLPPETETES SCGMDAVSMA FFRGMEEANK FVPSIVVPRD RDRETVVDVD DSSRSRKKRH ESEAAAEASK QMAAPESEEE
201: ATAREMLDRL MLDGYNPSLA SDMNEAEEEE ETMTMSRSSG RRRRSGTGTG TKHAVDMHTL LIRCAEAMSN NDWCAAAGLL ERIKYHSSPT GDSTQRLAHC
301: FAKGLEARLA GMGSQTYLSL VAKRASMVVV LKTYQLFMDS CCFLPVQLLF SNKTIYKAVA GRKKLHIVDY GLGHGIQWPD LLRWLSRREG GPPEVRFTGI
401: DKPQPGFRPA WPVEETGRRL NACACQFGVP FQFRGVTKKK PGAIAVEDLD IDPDEVLVVN SMFHLETLMD ESIVVERPNP RDVVLGTISK MRPSVFVHAI
501: ANGSHSSAFF MARFRDALQR YSALFDMMDN IAPRDDDKRV LVEQDIFARS ATSIIACEGV ERVVRPQNYK QWQARNQRAG LRQLPLDPEI VEALKDKVKK
601: EYHKCFVISE DQRWLLQGWK GRVLFAISTW TADS

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.