CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030744_P001	Maize	cytosol	63.56	94.31
Zm00001d041536_P001	Maize	cytosol	89.32	91.83
Os12t0573200-01	Rice	cytosol, plasma membrane	71.51	70.73
TraesCS5D01G092000.1	Wheat	cytosol	59.45	70.45
TraesCS5A01G080300.1	Wheat	cytosol	68.08	66.8
HORVU5Hr1G020900.1	Barley	cytosol	67.81	66.44
KXG29219	Sorghum	cytosol	49.73	52.69
OQU84105	Sorghum	cytosol	50.27	50.27
EES09053	Sorghum	cytosol	43.84	50.0
OQU84113	Sorghum	cytosol, nucleus, plastid	43.15	49.3
GSMUA_Achr5P08320_001	Banana	cytosol	30.14	49.0
OQU84111	Sorghum	cytosol	44.25	47.92
OQU84115	Sorghum	cytosol	31.51	47.23
OQU84112	Sorghum	cytosol	45.62	46.44
OQU84116	Sorghum	nucleus	39.32	46.37
KXG36217	Sorghum	cytosol	51.78	45.54
KXG26392	Sorghum	cytosol	39.18	45.11
KXG29228	Sorghum	cytosol	38.22	45.07
OQU90003	Sorghum	cytosol	47.53	44.95
OQU83981	Sorghum	cytosol	30.27	44.47
OQU84120	Sorghum	nucleus	38.49	44.32
KXG29223	Sorghum	cytosol	43.01	44.16
KXG29232	Sorghum	cytosol	41.1	44.12
OQU84119	Sorghum	cytosol, extracellular, mitochondrion, plastid	37.53	43.15
OQU84106	Sorghum	cytosol, endoplasmic reticulum, plastid	47.53	43.11
KXG29224	Sorghum	nucleus	40.68	42.86
OQU84114	Sorghum	mitochondrion	28.08	42.8
OQU83980	Sorghum	cytosol	35.75	42.03
OQU83979	Sorghum	plastid	34.79	41.85
OQU92829	Sorghum	cytosol	41.23	41.01
OQU83978	Sorghum	mitochondrion	35.34	40.76
KXG38103	Sorghum	cytosol	34.52	40.26
KXG21079	Sorghum	cytosol	34.11	39.97
KXG37250	Sorghum	cytosol	34.79	39.02
EES01740	Sorghum	cytosol	42.33	38.29
KXG21080	Sorghum	cytosol	32.74	38.18
OQU81651	Sorghum	cytosol	36.44	38.0
OQU91407	Sorghum	nucleus	32.05	34.11
EES18882	Sorghum	cytosol	33.01	32.88
EES18880	Sorghum	cytosol	32.74	32.25
EER91260	Sorghum	nucleus	31.78	32.18
KXG38064	Sorghum	nucleus	31.51	31.94
OQU91406	Sorghum	nucleus	31.23	30.48
EER97449	Sorghum	cytosol	19.18	25.59
EER95348	Sorghum	cytosol	18.77	25.56
KXG33821	Sorghum	cytosol	18.22	23.37
EES18257	Sorghum	cytosol	17.95	23.27
EER97346	Sorghum	cytosol	17.67	22.63
EES05727	Sorghum	cytosol	16.71	19.4
EES12703	Sorghum	cytosol, nucleus, plastid	15.21	17.02

Protein Annotations

MapMan:15.5.12	EntrezGene:8068115	UniProt:C5YQA7	EnsemblPlants:EES16206	ProteinID:EES16206	ProteinID:EES16206.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF41	EnsemblPlantsGene:SORBI_3008G138600	InterPro:TF_GRAS
UniParc:UPI0001A88604	RefSeq:XP_002442368.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:56755462..56761058

Molecular Weight (calculated)

80550.0 Da

IEP (calculated)

5.099

GRAVY (calculated)

-0.339

Length

730 amino acids

Sequence
(BLAST)

001: MGSSYYDPSP SPGADELFLY LSDLGPTSPS AYLDLPPTSP SAYLDLPPTP QGNTTGPKQD MLLPYISSML MEDDIDDTFF YDYPDNPALL QAQQSFLDIL
101: SDDASSPTTT TTTHSGASAS VNHNCSSCSS DAFDASASAP LTPAAVDSYV SAPAPATHFD GFDLDPAAFF SNGANSDLMS SAFLKGMEEA NKFLPTQDKL
201: VIDLDPPDDP KRFVLPTPTP APAADKLAPG FNAATVPAAV AVKEEVIFAA PDAAPGSGAV LGRGRRNRFD DDDDPELQHR SSKQSALQGD GDERDVFEKY
301: ILTSPEMCTE QMQKLRIAMQ EEAAKQEKAA AAAGNGKAKG RRGGRDVVDL RTLLVHCAQA VASDDRRSAT ELLRQIKQHA SPQGDATQRL AHCFAEGLQA
401: RLAGTGSMVY QSLMAKRTSA ADILQAYQLY MAAICFKKVV FVFSNHTIYN AALGKKKIHI VEYGIQYGFQ WPCFLRWIAD REGGPPEVRI TGIDLPQPGF
501: RPTQRIEETG RRLSKYAQQF GVPFKYQAIA ASKMESIRAE DLNLDPEEVL IVNCLYQFKN LMDESVVIES PRDIVLNNIR KMRPHTFIHA IVNGSFSAPF
601: FVTRFREALF FYSALFDALD ATTPRDSNQR MLIEENLFGR AALNVIACEG TDRVERPETY KQWQVRNQRA GLKQQPLNPD VVQIVRNKVK DCYHKDFVID
701: VDHHWLLQGW KGRILYAIST WVANDAPSYF

Best Arabidopsis Sequence Match ( AT2G29065.1 )
(BLAST)

001: MDPNFSESLN GFEYFDGNPN LLTDPMEDQY PPPSDTLLKY VSEILMEESN GDYKQSMFYD SLALRKTEEM LQQVITDSQN QSFSPADSLI TNSWDASGSI
101: DESAYSADPQ PVNEIMVKSM FSDAESALQF KKGVEEASKF LPNSDQWVIN LDIERSERRD SVKEEMGLDQ LRVKKNHERD FEEVRSSKQF ASNVEDSKVT
201: DMFDKVLLLD GECDPQTLLD SEIQAIRSSK NIGEKGKKKK KKKSQVVDFR TLLTHCAQAI STGDKTTALE FLLQIRQQSS PLGDAGQRLA HCFANALEAR
301: LQGSTGPMIQ TYYNALTSSL KDTAADTIRA YRVYLSSSPF VTLMYFFSIW MILDVAKDAP VLHIVDFGIL YGFQWPMFIQ SISDRKDVPR KLRITGIELP
401: QCGFRPAERI EETGRRLAEY CKRFNVPFEY KAIASQNWET IRIEDLDIRP NEVLAVNAGL RLKNLQDETG SEENCPRDAV LKLIRNMNPD VFIHAIVNGS
501: FNAPFFISRF KEAVYHYSAL FDMFDSTLPR DNKERIRFER EFYGREAMNV IACEEADRVE RPETYRQWQV RMVRAGFKQK TIKPELVELF RGKLKKWRYH
601: KDFVVDENSK WLLQGWKGRT LYASSCWVPA

Arabidopsis Description

SCL34Scarecrow-like protein 34 [Source:UniProtKB/Swiss-Prot;Acc:P0C884]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.