CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29219	Sorghum	cytosol	53.63	60.09
OQU84105	Sorghum	cytosol	52.72	55.75
OQU84111	Sorghum	cytosol	47.28	54.15
EES09053	Sorghum	cytosol	44.17	53.28
OQU84112	Sorghum	cytosol	48.96	52.72
KXG29223	Sorghum	cytosol	46.76	50.77
KXG36217	Sorghum	cytosol	53.89	50.12
OQU84113	Sorghum	cytosol, nucleus, plastid	41.45	50.08
OQU84115	Sorghum	cytosol	31.22	49.49
KXG29224	Sorghum	nucleus	43.01	47.91
GSMUA_Achr5P08320_001	Banana	cytosol	27.72	47.66
EES16206	Sorghum	cytosol	44.95	47.53
OQU84120	Sorghum	nucleus	38.34	46.69
OQU83981	Sorghum	cytosol	29.53	45.88
OQU84116	Sorghum	nucleus	36.53	45.56
OQU84114	Sorghum	mitochondrion	27.98	45.09
KXG29228	Sorghum	cytosol	36.01	44.91
OQU84106	Sorghum	cytosol, endoplasmic reticulum, plastid	46.76	44.84
KXG26392	Sorghum	cytosol	36.79	44.8
OQU83979	Sorghum	plastid	35.1	44.65
OQU83980	Sorghum	cytosol	35.88	44.61
KXG29232	Sorghum	cytosol	37.82	42.94
OQU84119	Sorghum	cytosol, extracellular, mitochondrion, plastid	33.94	41.26
OQU83978	Sorghum	mitochondrion	33.81	41.23
OQU81651	Sorghum	cytosol	36.53	40.29
KXG38103	Sorghum	cytosol	31.99	39.46
OQU92829	Sorghum	cytosol	37.31	39.24
KXG21080	Sorghum	cytosol	31.22	38.5
KXG21079	Sorghum	cytosol	30.96	38.36
KXG37250	Sorghum	cytosol	31.87	37.79
EES01740	Sorghum	cytosol	37.69	36.06
OQU91407	Sorghum	nucleus	29.66	33.38
EER91260	Sorghum	nucleus	30.83	33.01
KXG38064	Sorghum	nucleus	30.44	32.64
EES18882	Sorghum	cytosol	30.05	31.65
OQU91406	Sorghum	nucleus	30.44	31.42
EES18880	Sorghum	cytosol	29.27	30.5
EER97449	Sorghum	cytosol	17.88	25.23
EES18257	Sorghum	cytosol	17.49	23.98
EER95348	Sorghum	cytosol	16.58	23.88
KXG33821	Sorghum	cytosol	17.23	23.37
EER97346	Sorghum	cytosol	17.1	23.16
EES05727	Sorghum	cytosol	15.41	18.92
EES12703	Sorghum	cytosol, nucleus, plastid	14.51	17.18

Protein Annotations

EnsemblPlants:OQU90003	EnsemblPlantsGene:SORBI_3002G316500	EntrezGene:8080111	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF41	PFAM:PF03514	PFscan:PS50985	ProteinID:OQU90002.1	ProteinID:OQU90003
ProteinID:OQU90003.1	SEG:seg	UniParc:UPI0009DC835B	UniProt:A0A1W0W6M8	MapMan:15.5.12	:

Description

hypothetical protein

Coordinates

chr2:-:68947151..68951769

Molecular Weight (calculated)

86515.9 Da

IEP (calculated)

4.955

GRAVY (calculated)

-0.320

Length

772 amino acids

Sequence
(BLAST)

001: MAPLWLPPPQ SYPTPSTKSG MAGTPEEFPV QGGPEPEPFS PSVFLDLPPT PSEEDPPAST DDLALTFISR ILMEEDIDEK FLYHYPDHPE LLQAQQPFAQ
101: ILSDAGASSD FFATNNDGSG ACTLPPSSDV PALANTTWPF DPVEFPQLFL SSPCPDMGVG IGEFTADDAN RFLLPQQDAA SARFQRADKA SSFRNCGSAG
201: IQCSELLAGP EEETTTSTTS SPPTGDREHG ALASTFFSGQ NRVNIDMLNQ AFLRGMEEAK KFLPIDSSLL VEARGCKPPQ VFIPGHARNE DKVDRMLTFQ
301: GISNARGRKK WCNWQDLEST EMSRNSKLMA LAELEETDEI IDEIILNEYR LCLNGMLGLD ITMDSKDGNF VRKGNWKSAL RRRSLNEAVD FHTLLIHCAQ
401: AISTDDRWSA AMLLGKIKQH SSPRGDANQR LAHCFADGLE ARLAGTGSQV YKSLMSKRTS QVDILKAYQL YLTVCCFKMM AYKFSNMTIA NVIGGRRKLH
501: IVDYGMRDGI QWPSFLGILS TWEGGPPEVR ITGIDLPQPG FRPAAHIEEI GRRLSKCARQ FGIPFKFQSI AAKWEMVSVD DLNIDPDEAL IINGLFDFGN
601: LMDEGVDIYS PSPRDMVLNN IREMRPDVFI FCNVNGSHGT PFFVTRFREV LFFFSALFDM LDVTVPRDND RRLLIERVLF GRFAMNVIAC EGSDRVERHE
701: TYKQWQVRNH RAGLKQLPLD PDIVKVVRNK VKDSYHKDFV IDMDHQWLLE GWKGRIICAM STWVADDAFS EH

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.