CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038225_P001	Maize	cytosol	90.23	90.55
KXG33821	Sorghum	cytosol	73.18	72.41
GSMUA_Achr6P11780_001	Banana	cytosol	43.34	71.34
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	44.23	61.03
GSMUA_Achr10P...	Banana	cytosol	58.44	59.6
VIT_04s0044g01370.t01	Wine grape	nucleus	56.13	55.63
GSMUA_Achr3P02410_001	Banana	nucleus	57.02	54.68
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	54.71	54.51
KRH64568	Soybean	cytosol	54.0	51.01
KRH18097	Soybean	cytosol	53.46	50.93
CDY61060	Canola	cytosol	48.67	50.83
KRH53364	Soybean	cytosol	54.0	50.67
KRH15917	Soybean	cytosol	52.93	50.42
CDY00377	Canola	cytosol	49.02	50.18
Bra012280.1-P	Field mustard	cytosol	48.67	49.91
CDY50240	Canola	cytosol	50.44	49.31
Solyc04g064550.1.1	Tomato	mitochondrion	49.2	49.2
CDY68224	Canola	cytosol	50.09	48.96
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	48.49	48.84
AT1G21450.1	Thale cress	nucleus	51.15	48.57
EER97346	Sorghum	cytosol	38.72	38.25
EER95348	Sorghum	cytosol	35.52	37.31
EER97449	Sorghum	cytosol	36.23	37.29
EES05727	Sorghum	cytosol	28.6	25.6
EES12703	Sorghum	cytosol, nucleus, plastid	28.6	24.69
OQU83981	Sorghum	cytosol	19.54	22.13
KXG21079	Sorghum	cytosol	23.45	21.19
OQU84115	Sorghum	cytosol	17.94	20.74
KXG38103	Sorghum	cytosol	22.74	20.45
OQU84116	Sorghum	nucleus	22.2	20.19
KXG21080	Sorghum	cytosol	22.38	20.13
OQU84113	Sorghum	cytosol, nucleus, plastid	22.74	20.03
OQU84111	Sorghum	cytosol	23.98	20.03
KXG29219	Sorghum	cytosol	23.98	19.59
OQU91407	Sorghum	nucleus	23.27	19.1
OQU84120	Sorghum	nucleus	21.49	19.09
KXG37250	Sorghum	cytosol	21.85	18.89
EES09053	Sorghum	cytosol	21.31	18.75
KXG38064	Sorghum	nucleus	23.62	18.47
KXG26392	Sorghum	cytosol	20.78	18.45
KXG29223	Sorghum	cytosol	23.09	18.28
KXG29232	Sorghum	cytosol	22.02	18.24
OQU84112	Sorghum	cytosol	22.91	17.99
EES16206	Sorghum	cytosol	23.27	17.95
KXG29228	Sorghum	cytosol	19.54	17.77
OQU91406	Sorghum	nucleus	23.45	17.65
OQU84105	Sorghum	cytosol	22.74	17.53
OQU90003	Sorghum	cytosol	23.98	17.49
OQU84119	Sorghum	cytosol, extracellular, mitochondrion, plastid	19.72	17.48
EER91260	Sorghum	nucleus	22.2	17.34
KXG29224	Sorghum	nucleus	21.31	17.32
OQU83979	Sorghum	plastid	18.65	17.3
OQU83980	Sorghum	cytosol	19.01	17.23
OQU92829	Sorghum	cytosol	22.2	17.03
OQU84106	Sorghum	cytosol, endoplasmic reticulum, plastid	23.98	16.77
OQU84114	Sorghum	mitochondrion	14.21	16.7
EES18880	Sorghum	cytosol	21.14	16.06
OQU83978	Sorghum	mitochondrion	17.76	15.8
EES18882	Sorghum	cytosol	20.43	15.69
EES01740	Sorghum	cytosol	22.38	15.61
KXG36217	Sorghum	cytosol	22.38	15.18
OQU81651	Sorghum	cytosol	18.47	14.86

Protein Annotations

MapMan:15.5.12	EntrezGene:8076981	UniProt:C5YY78	EnsemblPlants:EES18257	ProteinID:EES18257	ProteinID:EES18257.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF10	EnsemblPlantsGene:SORBI_3009G143400	unigene:Sbi.8151
InterPro:Scarecrow-like_1	InterPro:TF_GRAS	UniParc:UPI0001A8878B	RefSeq:XP_002439827.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:50082798..50087069

Molecular Weight (calculated)

63074.1 Da

IEP (calculated)

4.589

GRAVY (calculated)

-0.331

Length

563 amino acids

Sequence
(BLAST)

001: MSFVRQADPS TSCAETTYIH KFVPPGSVFP AQRFVSGTDL VHYGPQPYNA EGYKQSAFNG TVPHEFQNFY STDSYAESHF NEATYSPAIS NISQQNSQSL
101: SDNQTSDLEV EFDEDEMRLK LQELEHALLD DGDEIFSDFS GSIIDEWNDS IKKNNEWSNT MKDIVSPDSP KESSPESSLC CLDSNIGEAR HPKQLLFDCA
201: EAISECSIDE AQSIITELRQ KVAIQGDPSQ RIAAYLVEGL AAAIQSSGKG IYRALRCKEA PTLYQLSAMQ ILFEICPCFR LGFMAANYAI LEACKGEEVV
301: HIIDFDINQG SQYITLIQSL RNNSNKPRLL RITGVDDPES VHRAVGGLKV VGQRLEKLAE DCEVPFEFRA VAANTEDVTP GMLDCRPGEA LIVNFAFLLH
401: HLPDESVSIV NQRDQLLRMV KGLQPKLVTL VEQDANTNTT PFLARFREVY DYYSALFDSL DATLPRESPD RMNVERQCLA REIVNILACE GPDRVERYEV
501: AGKWRARMAM AGFAPCPFSS NVINGIRSLL KSSYCDKYRF EKVHDGLHFG WGDKTLVFSS AWQ

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.