Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017915.1-P | Field mustard | cytoskeleton, cytosol, nucleus, plastid | 60.71 | 88.24 |
| CDY00377 | Canola | cytosol | 79.76 | 86.0 |
| CDY50240 | Canola | cytosol | 83.47 | 85.94 |
| CDY68224 | Canola | cytosol | 83.31 | 85.76 |
| CDY61060 | Canola | cytosol | 75.89 | 83.49 |
| Bra012280.1-P | Field mustard | cytosol | 76.56 | 82.7 |
| GSMUA_Achr6P11780_001 | Banana | cytosol | 38.62 | 66.96 |
| KRH15917 | Soybean | cytosol | 60.88 | 61.08 |
| KRH18097 | Soybean | cytosol | 60.71 | 60.91 |
| KRH64568 | Soybean | cytosol | 59.87 | 59.56 |
| KRH53364 | Soybean | cytosol | 59.53 | 58.83 |
| VIT_04s0044g01370.t01 | Wine grape | nucleus | 55.65 | 58.1 |
| Solyc04g064550.1.1 | Tomato | mitochondrion | 54.97 | 57.9 |
| PGSC0003DMT400063944 | Potato | cytosol, mitochondrion | 54.47 | 57.78 |
| GSMUA_Achr10P... | Banana | cytosol | 51.94 | 55.8 |
| Os01t0881500-01 | Rice | cytosol | 48.74 | 52.26 |
| GSMUA_Achr3P02410_001 | Banana | nucleus | 51.6 | 52.13 |
| TraesCS3B01G441600.1 | Wheat | cytosol | 48.23 | 51.81 |
| TraesCS3D01G403100.1 | Wheat | cytosol | 48.06 | 51.63 |
| TraesCS3A01G408000.1 | Wheat | cytosol | 47.89 | 51.45 |
| HORVU3Hr1G091250.1 | Barley | cytosol | 47.72 | 51.27 |
| EES18257 | Sorghum | cytosol | 48.57 | 51.15 |
| KXG33821 | Sorghum | cytosol | 48.74 | 50.79 |
| Zm00001d038225_P001 | Maize | cytosol | 46.54 | 49.2 |
| AT2G04890.1 | Thale cress | cytosol | 32.55 | 46.73 |
| AT5G48150.4 | Thale cress | cytosol | 36.09 | 43.67 |
| AT4G17230.1 | Thale cress | cytosol | 34.91 | 39.13 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 36.93 | 36.44 |
| AT5G52510.1 | Thale cress | nucleus | 28.16 | 26.09 |
| AT2G29065.1 | Thale cress | cytosol, nucleus, plastid | 21.75 | 20.48 |
| AT3G46600.1 | Thale cress | cytosol | 19.9 | 20.24 |
| AT5G59450.1 | Thale cress | nucleus | 20.57 | 20.0 |
| AT2G29060.1 | Thale cress | cytosol | 20.74 | 17.72 |
| AT1G07530.1 | Thale cress | cytosol | 22.43 | 17.3 |
| AT1G07520.3 | Thale cress | cytosol | 20.07 | 17.1 |
| AT2G37650.1 | Thale cress | cytosol | 20.07 | 16.57 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:838743 | ProteinID:AAF87898.1 | ProteinID:AEE30103.1 | EMBL:AF036300 | EMBL:AF210731 |
| ArrayExpress:AT1G21450 | EnsemblPlantsGene:AT1G21450 | RefSeq:AT1G21450 | TAIR:AT1G21450 | RefSeq:AT1G21450-TAIR-G | EnsemblPlants:AT1G21450.1 |
| TAIR:AT1G21450.1 | EMBL:AY045833 | EMBL:AY084492 | EMBL:AY096626 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | RefSeq:NP_173566.1 | PFAM:PF03514 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF10 | UniProt:Q9SDQ3 | Symbol:SCL1 |
| InterPro:Scarecrow-like_1 | InterPro:TF_GRAS | UniParc:UPI000005EB47 | SEG:seg | : | : |
Description
SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
Coordinates
chr1:+:7508701..7511801
Molecular Weight (calculated)
66704.1 Da
IEP (calculated)
4.743
GRAVY (calculated)
-0.424
Length
593 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.