Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35589 | Canola | cytosol | 89.04 | 88.7 |
| CDY42968 | Canola | cytosol | 88.47 | 87.48 |
| Bra026237.1-P | Field mustard | plastid | 88.09 | 87.1 |
| CDY50128 | Canola | cytosol, plastid | 87.15 | 86.49 |
| CDY58168 | Canola | plastid | 86.58 | 86.42 |
| Bra021063.1-P | Field mustard | plastid | 86.58 | 86.42 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 61.44 | 59.63 |
| KRH51175 | Soybean | cytosol | 60.87 | 59.41 |
| KRH01979 | Soybean | cytosol | 60.87 | 59.08 |
| KRH36572 | Soybean | cytosol | 60.87 | 58.76 |
| KRH11548 | Soybean | nucleus | 60.87 | 58.33 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 58.98 | 57.56 |
| PGSC0003DMT400034763 | Potato | cytosol | 58.03 | 57.49 |
| PGSC0003DMT400021748 | Potato | nucleus | 59.36 | 56.17 |
| PGSC0003DMT400060553 | Potato | cytosol | 55.01 | 55.53 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 55.39 | 52.98 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 41.59 | 51.64 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 31.95 | 51.52 |
| AT2G04890.1 | Thale cress | cytosol | 40.08 | 51.33 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 48.58 | 51.3 |
| AT5G48150.4 | Thale cress | cytosol | 45.37 | 48.98 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 50.09 | 48.18 |
| Os03t0193000-01 | Rice | plastid | 47.83 | 47.29 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 43.67 | 47.24 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 47.83 | 47.2 |
| EER95348 | Sorghum | cytosol | 47.45 | 46.83 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 34.78 | 46.35 |
| Zm00001d006701_P001 | Maize | cytosol | 48.39 | 46.21 |
| Zm00001d030500_P001 | Maize | nucleus | 47.26 | 46.13 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 46.69 | 46.08 |
| Os07t0583600-01 | Rice | plasma membrane | 47.26 | 45.96 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 46.5 | 45.9 |
| EER97449 | Sorghum | cytosol | 47.45 | 45.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.05 | 45.79 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 47.83 | 45.67 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 28.54 | 45.35 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 45.94 | 45.25 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 47.26 | 45.13 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 47.45 | 45.06 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 47.26 | 45.05 |
| Zm00001d021946_P001 | Maize | cytosol | 47.45 | 44.98 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 47.07 | 41.43 |
| HORVU5Hr1G099160.1 | Barley | plastid | 48.39 | 40.63 |
| AT1G21450.1 | Thale cress | nucleus | 39.13 | 34.91 |
| AT3G46600.1 | Thale cress | cytosol | 25.52 | 23.16 |
| AT5G52510.1 | Thale cress | nucleus | 26.28 | 21.72 |
| AT5G59450.1 | Thale cress | nucleus | 24.57 | 21.31 |
| AT2G29065.1 | Thale cress | cytosol, nucleus, plastid | 25.14 | 21.11 |
| AT1G07530.1 | Thale cress | cytosol | 28.73 | 19.77 |
| AT2G29060.1 | Thale cress | cytosol | 25.9 | 19.74 |
| AT2G37650.1 | Thale cress | cytosol | 26.46 | 19.5 |
| AT1G07520.3 | Thale cress | cytosol | 24.95 | 18.97 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:827435 | UniProt:A0A1P8B5A9 | ProteinID:ANM66772.1 | ArrayExpress:AT4G17230 | EnsemblPlantsGene:AT4G17230 |
| RefSeq:AT4G17230 | TAIR:AT4G17230 | RefSeq:AT4G17230-TAIR-G | EnsemblPlants:AT4G17230.1 | TAIR:AT4G17230.1 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR005202 | RefSeq:NP_001328648.1 | RefSeq:NP_193456.4 | PFAM:PF03514 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50985 | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF45 | Symbol:SCL13 | InterPro:Scarecrow-like_13 | InterPro:TF_GRAS | UniParc:UPI0001A7B0F5 | : |
Description
SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
Coordinates
chr4:-:9660593..9663809
Molecular Weight (calculated)
58458.3 Da
IEP (calculated)
5.735
GRAVY (calculated)
-0.233
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.