Factsheet for Solyc11g012510.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034763	Potato	cytosol	94.83	96.25
Solyc04g014830.1.1	Tomato	mitochondrion	73.25	71.79
VIT_00s0463g00020.t01	Wine grape	nucleus	67.71	67.34
KRH51175	Soybean	cytosol	61.99	61.99
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	38.01	61.86
KRH01979	Soybean	cytosol	61.99	61.65
KRH11548	Soybean	nucleus	61.81	60.69
KRH36572	Soybean	cytosol	60.89	60.22
GSMUA_Achr4P07010_001	Banana	cytosol	36.35	60.06
AT4G17230.1	Thale cress	cytosol	57.56	58.98
CDY35589	Canola	cytosol	55.54	56.69
TraesCS5A01G414000.1	Wheat	cytosol	44.46	56.57
CDY50128	Canola	cytosol, plastid	55.54	56.47
Bra021063.1-P	Field mustard	plastid	55.17	56.42
CDY58168	Canola	plastid	55.17	56.42
CDY42968	Canola	cytosol	55.17	55.89
Solyc06g035620.2.1	Tomato	cytosol	33.39	55.52
Bra026237.1-P	Field mustard	plastid	54.8	55.51
Solyc07g047950.1.1	Tomato	mitochondrion	55.17	54.86
TraesCS5A01G409800.1	Wheat	nucleus, plastid	50.18	54.29
GSMUA_Achr4P11050_001	Banana	nucleus	38.38	52.39
GSMUA_AchrUn_...	Banana	nucleus	41.14	52.1
Solyc07g065270.1.1	Tomato	nucleus	51.29	51.67
Zm00001d030500_P001	Maize	nucleus	51.48	51.48
EER95348	Sorghum	cytosol	50.74	51.31
Os07t0583600-01	Rice	plasma membrane	51.48	51.29
TraesCS2B01G217500.1	Wheat	cytosol	52.4	51.26
Os03t0193000-01	Rice	plastid	50.37	51.03
EER97449	Sorghum	cytosol	51.29	50.82
Zm00001d048199_P001	Maize	mitochondrion, nucleus	50.18	50.75
TraesCS5D01G419400.2	Wheat	cytosol	51.11	50.36
HORVU2Hr1G036280.1	Barley	cytosol	51.66	50.27
TraesCS2A01G189600.1	Wheat	cytosol	51.29	50.18
TraesCS2D01G198200.1	Wheat	cytosol	51.29	50.09
Zm00001d006701_P001	Maize	cytosol	50.92	49.82
Zm00001d021946_P001	Maize	cytosol	50.92	49.46
TraesCS4B01G266700.1	Wheat	cytosol	48.34	48.79
HORVU4Hr1G071670.1	Barley	cytosol	47.97	48.51
TraesCS4A01G039000.1	Wheat	nucleus	43.73	48.47
TraesCS4D01G266400.1	Wheat	cytosol	47.79	48.32
HORVU5Hr1G099160.1	Barley	plastid	50.92	43.81
Solyc12g005340.1.1	Tomato	cytosol	44.46	43.19
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	45.39	42.2
Solyc04g064550.1.1	Tomato	mitochondrion	38.56	37.12
Solyc04g011630.1.1	Tomato	cytosol	9.96	31.76
Solyc06g036170.1.1	Tomato	nucleus	28.78	26.09
Solyc03g025170.1.1	Tomato	nucleus	29.52	25.36
Solyc01g100200.2.1	Tomato	nucleus	25.83	21.02
Solyc05g053090.1.1	Tomato	cytosol	27.49	20.05
Solyc06g082530.1.1	Tomato	cytosol	23.8	19.75
Solyc06g076280.1.1	Tomato	cytosol	26.75	19.39
Solyc09g010920.1.1	Tomato	cytosol	26.75	19.05
Solyc10g086530.1.1	Tomato	cytosol	26.01	18.53

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	UniProt:K4D655	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF45
InterPro:Scarecrow-like_13	EnsemblPlantsGene:Solyc11g012510.1	EnsemblPlants:Solyc11g012510.1.1	InterPro:TF_GRAS	UniParc:UPI0002769F7A	:

Description

No Description!

Coordinates

chr11:-:5329768..5331396

Molecular Weight (calculated)

60552.8 Da

IEP (calculated)

5.607

GRAVY (calculated)

-0.351

Length

542 amino acids

Sequence
(BLAST)

001: MQTSQRTQMS GSVHGLYNQQ MQQVEQYYAP YDVLKNSCKD NRSSGMQFSL QAQDEQFFTL DSSPATDYVV NDSPPALSVS SNRSPFSPQC SQSYMSDLHH
101: SSDNTCGSPL SGCSGIDDGD LRHVLRELEN KLLGPESDTD DSCSCSLNDM VSKPSSVTRW NRVLDMAPGL NLKELLDACA EAVSDADIST AEALMSALEQ
201: RVSVSGEPME RLGAYVLEGI RARLLSSGSI IYKKLKCKEP TGLELLSYMQ VIFNMCPYYK FAYMSANVVI NEAMMNENRI HIIDFQIAQG SQWMFLLHYL
301: AHRPGGPPFV RITGVDDDES AYARGGGLQL VGKRLAEVAK SCGVPFEFHG AALSGCEVQL ENLRVKHGEA LAVNFPYMLH HMPDESVSTI NHRDRLLRLV
401: KSLSPKIVTL VEQESNTNTA PFLPRFRETL DYYTAMFESI DAARPRDDKE RISAEEHCVA RDVVNIIACE GADRVERHEL FGKWRLRLMM AGFTQCQLSP
501: SVGETIKHML KEYSPNYRYA EGEGALYLGW KNRALATSSA WR

Best Arabidopsis Sequence Match ( AT4G17230.2 )
(BLAST)

001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN

Arabidopsis Description

SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.