Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078286 | Potato | nucleus | 93.87 | 91.9 |
| Solyc04g011630.1.1 | Tomato | cytosol | 15.16 | 58.24 |
| CDX68389 | Canola | cytosol | 7.04 | 54.12 |
| Bra002564.1-P | Field mustard | endoplasmic reticulum, golgi | 25.42 | 52.37 |
| VIT_06s0004g04990.t01 | Wine grape | cytosol | 35.38 | 52.26 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 25.11 | 51.73 |
| Zm00001d034664_P001 | Maize | plastid | 38.13 | 44.54 |
| VIT_06s0004g04970.t01 | Wine grape | cytosol | 44.87 | 44.53 |
| Solyc01g100200.2.1 | Tomato | nucleus | 44.87 | 43.99 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 27.57 | 43.58 |
| KRH10240 | Soybean | cytosol | 40.12 | 43.23 |
| AT3G46600.1 | Thale cress | cytosol | 37.98 | 42.54 |
| Bra033813.1-P | Field mustard | nucleus | 37.83 | 42.44 |
| KRH29771 | Soybean | cytosol | 44.1 | 42.35 |
| KRH24773 | Soybean | nucleus | 44.41 | 42.21 |
| VIT_06s0004g04980.t01 | Wine grape | nucleus | 45.33 | 42.05 |
| KRH23095 | Soybean | cytosol | 41.96 | 41.7 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 28.94 | 41.45 |
| CDX82987 | Canola | nucleus | 37.83 | 41.1 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 39.82 | 40.88 |
| KRH23094 | Soybean | cytosol | 34.46 | 40.69 |
| KXG37250 | Sorghum | cytosol | 40.28 | 40.4 |
| CDY33040 | Canola | nucleus | 36.91 | 40.37 |
| GSMUA_Achr10P... | Banana | nucleus | 27.26 | 40.27 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 38.59 | 39.13 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 39.05 | 38.81 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 39.05 | 38.81 |
| AT5G59450.1 | Thale cress | nucleus | 36.14 | 38.69 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 38.74 | 38.63 |
| GSMUA_Achr10P... | Banana | cytosol | 34.92 | 38.06 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 34.46 | 37.63 |
| Zm00001d011070_P001 | Maize | cytosol | 35.99 | 37.48 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 35.07 | 37.42 |
| CDX68388 | Canola | cytosol | 23.58 | 37.2 |
| Solyc06g076280.1.1 | Tomato | cytosol | 42.42 | 37.03 |
| KXG21080 | Sorghum | cytosol | 35.22 | 36.74 |
| KXG38103 | Sorghum | cytosol | 35.07 | 36.58 |
| Solyc10g086530.1.1 | Tomato | cytosol | 42.42 | 36.4 |
| Os03t0690600-03 | Rice | cytosol | 40.74 | 36.39 |
| Solyc09g010920.1.1 | Tomato | cytosol | 42.11 | 36.14 |
| Solyc05g053090.1.1 | Tomato | cytosol | 41.04 | 36.07 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 21.59 | 35.97 |
| Zm00001d028603_P001 | Maize | cytosol | 40.28 | 35.83 |
| KXG21079 | Sorghum | cytosol | 34.0 | 35.63 |
| OQU92829 | Sorghum | cytosol | 39.97 | 35.56 |
| Zm00001d035671_P001 | Maize | cytosol | 34.0 | 35.46 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 31.7 | 34.73 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 38.59 | 32.56 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 38.59 | 32.47 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 38.44 | 32.35 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 38.9 | 32.27 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 35.07 | 32.12 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 33.69 | 31.88 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 34.3 | 31.82 |
| Zm00001d047813_P002 | Maize | nucleus | 39.97 | 31.48 |
| GSMUA_AchrUn_... | Banana | cytosol | 31.39 | 31.11 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 33.54 | 31.02 |
| Solyc06g035620.2.1 | Tomato | cytosol | 15.47 | 30.98 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 33.84 | 30.91 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 33.84 | 30.74 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 33.54 | 30.59 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 33.84 | 30.48 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 32.62 | 30.39 |
| OQU91407 | Sorghum | nucleus | 31.85 | 30.32 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 33.54 | 30.29 |
| EER91260 | Sorghum | nucleus | 33.23 | 30.1 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 33.23 | 30.06 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 33.08 | 29.96 |
| EES18882 | Sorghum | cytosol | 33.54 | 29.88 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 32.77 | 29.68 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 33.08 | 29.63 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 32.62 | 29.5 |
| Zm00001d033166_P001 | Maize | nucleus | 32.92 | 29.37 |
| Zm00001d035670_P001 | Maize | cytosol | 32.62 | 29.34 |
| KXG38064 | Sorghum | nucleus | 32.01 | 29.03 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 32.31 | 28.98 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 29.71 | 28.7 |
| OQU91406 | Sorghum | nucleus | 32.16 | 28.07 |
| EES18880 | Sorghum | cytosol | 31.85 | 28.07 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 31.7 | 27.34 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 20.52 | 24.59 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 20.37 | 24.05 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 19.75 | 23.8 |
| Solyc12g005340.1.1 | Tomato | cytosol | 20.06 | 23.48 |
| Solyc07g065270.1.1 | Tomato | nucleus | 19.3 | 23.42 |
| Solyc07g063940.1.1 | Tomato | cytosol, nucleus, peroxisome | 20.06 | 22.47 |
| Solyc04g064550.1.1 | Tomato | mitochondrion | 17.46 | 20.25 |
| Solyc06g036170.1.1 | Tomato | nucleus | 15.77 | 17.22 |
| Solyc03g025170.1.1 | Tomato | nucleus | 15.47 | 16.01 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 7.5 | 14.71 |
Protein Annotations
| MapMan:15.5.12 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR005202 | UniProt:K4CAB2 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF56 |
| EnsemblPlantsGene:Solyc06g082530.1 | EnsemblPlants:Solyc06g082530.1.1 | InterPro:TF_GRAS | UniParc:UPI00027659C1 | SEG:seg | : |
Description
No Description!
Coordinates
chr6:-:48317827..48319788
Molecular Weight (calculated)
74447.2 Da
IEP (calculated)
6.188
GRAVY (calculated)
-0.613
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTSSHFPGD HRSSDGFEFG HCCGGGGDND VVCFSSRRSS EEEVVIGSGS DRTVVQGDYF DGVFKYIHQM LMEDQEDLEN RPCMFQDCIA LQAAEKSFYD
101: ALNPPTIHRD FVDDSGNQFQ DDYCDAVNHQ FAETTFNSDL DNDQFSFFYN TNTICHGVGD GISVVNGDTS NAINYHQKGE NENKKHTRDE NSESSKGRKS
201: KQLASNGTED GKTEEHYDKA LLCPGLNPSF YENRSKSATA WDNAAWDKQK SSHIKQSKRG RPRGSKKGVK TNEVVDLTSL LTRCAEAAAS YNTKTFIEVL
301: NKIREHSSPF GDATSRLAYC FANALEARFA GGDTTWITSK KISAADFLKA YQVYITACPF KRMSNIFANK SIAKLTSESS RVHIIDFGIL YGFQWPCIIH
401: GISLRPGGPP KLKITGIDFP QPGFRPAERV EETGRRLKEY CKRFDVPFEY KAIAKKWDEI KVEDLDIDRD EIVVVNCLYR LKNVLDETVE VTHNNKNPRD
501: AVLNLIKEIN PHYFVHGIVN AMYNASFFTT RFREALFHFS SQFDMFEATM PREDEGRMMF EQEVFGRDIM NVIASEGAER VERPESYKKW SMRNQIAGFR
601: QLPLDQDIVK EVKTKVKMFY HGDFLVDEDS NWMLQGWKGR IMYALSVWEP IHK
101: ALNPPTIHRD FVDDSGNQFQ DDYCDAVNHQ FAETTFNSDL DNDQFSFFYN TNTICHGVGD GISVVNGDTS NAINYHQKGE NENKKHTRDE NSESSKGRKS
201: KQLASNGTED GKTEEHYDKA LLCPGLNPSF YENRSKSATA WDNAAWDKQK SSHIKQSKRG RPRGSKKGVK TNEVVDLTSL LTRCAEAAAS YNTKTFIEVL
301: NKIREHSSPF GDATSRLAYC FANALEARFA GGDTTWITSK KISAADFLKA YQVYITACPF KRMSNIFANK SIAKLTSESS RVHIIDFGIL YGFQWPCIIH
401: GISLRPGGPP KLKITGIDFP QPGFRPAERV EETGRRLKEY CKRFDVPFEY KAIAKKWDEI KVEDLDIDRD EIVVVNCLYR LKNVLDETVE VTHNNKNPRD
501: AVLNLIKEIN PHYFVHGIVN AMYNASFFTT RFREALFHFS SQFDMFEATM PREDEGRMMF EQEVFGRDIM NVIASEGAER VERPESYKKW SMRNQIAGFR
601: QLPLDQDIVK EVKTKVKMFY HGDFLVDEDS NWMLQGWKGR IMYALSVWEP IHK
001: MDAILPVPVD GFRFDTGSGS CCKPRNNLES GTTNRFTCFN ESESQSNPSP TESKVCSDYL PVFKYINDML MEEDLEGQSC MLEDSLALQA AERSFFEVLQ
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
Arabidopsis Description
SCL30Scarecrow-like protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.