Factsheet for Solyc12g005340.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056120	Potato	cytosol	95.7	95.53
Solyc06g035620.2.1	Tomato	cytosol	53.23	91.1
GSMUA_Achr8P03610_001	Banana	cytosol	20.07	77.78
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	74.55	71.36
VIT_19s0014g04940.t01	Wine grape	cytosol	69.53	66.55
KRH55599	Soybean	plastid	64.87	63.73
KRH25905	Soybean	cytosol, plastid	63.08	61.97
KRH27129	Soybean	plastid	61.65	61.32
KRH22210	Soybean	cytosol, plastid	63.08	61.01
GSMUA_Achr6P24310_001	Banana	cytosol	56.45	58.88
EER97346	Sorghum	cytosol	55.91	54.74
HORVU2Hr1G043780.1	Barley	cytosol	55.38	54.21
TraesCS2D01G220200.1	Wheat	cytosol	54.84	53.68
TraesCS2B01G239400.1	Wheat	cytosol	54.84	53.68
Os07t0545800-01	Rice	cytosol, nucleus	54.84	53.59
TraesCS2A01G214400.1	Wheat	cytosol	54.48	53.33
Zm00001d006551_P001	Maize	golgi, mitochondrion	55.73	50.41
Solyc07g065270.1.1	Tomato	nucleus	46.24	47.96
Solyc07g047950.1.1	Tomato	mitochondrion	46.77	47.89
Solyc11g012510.1.1	Tomato	mitochondrion	43.19	44.46
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	41.22	44.23
Solyc04g014830.1.1	Tomato	mitochondrion	41.04	41.41
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	42.29	40.48
Solyc04g064550.1.1	Tomato	mitochondrion	36.56	36.23
Solyc04g011630.1.1	Tomato	cytosol	10.39	34.12
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	17.38	29.13
Solyc06g036170.1.1	Tomato	nucleus	26.52	24.75
Solyc03g025170.1.1	Tomato	nucleus	27.78	24.56
Solyc06g082530.1.1	Tomato	cytosol	23.48	20.06
Solyc01g100200.2.1	Tomato	nucleus	23.48	19.67
Solyc05g053090.1.1	Tomato	cytosol	24.37	18.3
Solyc06g076280.1.1	Tomato	cytosol	24.37	18.18
Solyc09g010920.1.1	Tomato	cytosol	24.73	18.13
Solyc10g086530.1.1	Tomato	cytosol	24.01	17.61

Protein Annotations

MapMan:15.5.12	UniProt:G8Z267	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EMBL:GQ261245	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF18	EnsemblPlantsGene:Solyc12g005340.1	EnsemblPlants:Solyc12g005340.1.1	InterPro:TF_GRAS	UniParc:UPI0002262D27	SEG:seg

Description

Hop-interacting protein THI039 [Source:UniProtKB/TrEMBL;Acc:G8Z267]

Coordinates

chr12:-:211757..213433

Molecular Weight (calculated)

62412.2 Da

IEP (calculated)

5.768

GRAVY (calculated)

-0.288

Length

558 amino acids

Sequence
(BLAST)

001: MDSHHLVAYG VTGSDLSYSS CPTVSPLENR PFGTSKFDSG NSPLVNYFNS ETFNTVSDYQ EQPSCTENLS GASSSSGSSL DYNQYFHRPS PSEDHLPEAP
101: YSRNMKHTLL QLESALMGPD KEAMKSSPYL GENMGAQTSG QRYKAWNKEA QVVRHQQSVV SILNGIQSDK RDNVMEDLPL QGVPSSNLKQ LLIACARALA
201: ENKLDDFEIL VAKARSVVSV TGDPIQRLGA YIVEGLVARK ELSGTTIYRS LKCKEPAGKD LFSYMYILYE ICPYLKFGYM AANGAIVEAC RNEDRIHIID
301: FQIAQGTQWM TLLQALAARP GGAPYVRITG IDDPVSQYAR GDGLAAVARR LSAISEEFNI AVEFHAVPVF APEITWDMLD VRPGEALAVN FPLQLHHTPD
401: ESVDVNNPRD GLIRMIKSLS PKIVTLVEQE SNTNTAPFLP RFVEALDYYH AMFESIDVTL LRDMKERINV EQHCLARDIV NVIACEGKER VERHELLGKW
501: KSRFMMAGFQ QYPLSSYVNS VIKDLMKRYS EHYTLVEKDG AMLLGWKERN LVSASAWF

Best Arabidopsis Sequence Match ( AT1G50600.3 )
(BLAST)

001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.