Factsheet for Solyc07g065270.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057111	Potato	nucleus	96.47	96.65
Bra026077.1-P	Field mustard	cytosol	38.48	70.41
GSMUA_Achr4P07010_001	Banana	cytosol	42.19	69.21
VIT_19s0090g01740.t01	Wine grape	cytosol	63.2	62.39
Solyc07g047950.1.1	Tomato	mitochondrion	62.64	61.83
CDY71156	Canola	cytosol, plastid	44.61	61.54
CDY07309	Canola	cytosol	26.95	60.42
TraesCS5A01G414000.1	Wheat	cytosol	47.4	59.86
GSMUA_Achr4P11050_001	Banana	nucleus	43.87	59.45
CDY22807	Canola	nucleus	46.28	59.29
CDY37124	Canola	nucleus	46.28	59.29
Solyc06g035620.2.1	Tomato	cytosol	35.32	58.28
GSMUA_AchrUn_...	Banana	nucleus	45.54	57.24
Bra018860.1-P	Field mustard	nucleus	55.58	56.95
KRH73868	Soybean	cytosol	57.25	56.51
TraesCS5A01G409800.1	Wheat	nucleus, plastid	52.42	56.29
KRH14274	Soybean	cytosol	56.88	56.15
KRG98562	Soybean	nucleus	56.51	55.78
Os07t0583600-01	Rice	plasma membrane	55.95	55.33
KRH46306	Soybean	cytosol	55.39	54.68
EER97449	Sorghum	cytosol	54.28	53.38
TraesCS2B01G217500.1	Wheat	cytosol	54.83	53.25
Zm00001d030500_P001	Maize	nucleus	53.16	52.77
HORVU2Hr1G036280.1	Barley	cytosol	54.46	52.6
Os03t0193000-01	Rice	plastid	52.23	52.52
TraesCS2D01G198200.1	Wheat	cytosol	54.09	52.43
TraesCS2A01G189600.1	Wheat	cytosol	53.72	52.17
TraesCS5D01G419400.2	Wheat	cytosol	53.16	52.0
Zm00001d006701_P001	Maize	cytosol	53.35	51.81
EER95348	Sorghum	cytosol	51.3	51.49
TraesCS4D01G266400.1	Wheat	cytosol	51.12	51.31
HORVU4Hr1G071670.1	Barley	cytosol	51.12	51.31
Solyc11g012510.1.1	Tomato	mitochondrion	51.67	51.29
TraesCS4B01G266700.1	Wheat	cytosol	50.93	51.02
Zm00001d048199_P001	Maize	mitochondrion, nucleus	50.74	50.93
Zm00001d021946_P001	Maize	cytosol	52.79	50.9
TraesCS4A01G039000.1	Wheat	nucleus	45.72	50.31
AT1G50600.2	Thale cress	golgi, mitochondrion	55.39	49.58
Solyc04g014830.1.1	Tomato	mitochondrion	50.37	49.01
KRH38269	Soybean	cytosol	31.41	47.88
Solyc12g005340.1.1	Tomato	cytosol	47.96	46.24
HORVU5Hr1G099160.1	Barley	plastid	52.79	45.08
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	48.51	44.77
Solyc04g064550.1.1	Tomato	mitochondrion	39.03	37.3
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	22.86	36.94
Solyc04g011630.1.1	Tomato	cytosol	9.85	31.18
Solyc06g036170.1.1	Tomato	nucleus	28.44	25.59
Solyc03g025170.1.1	Tomato	nucleus	28.81	24.56
Solyc01g100200.2.1	Tomato	nucleus	25.46	20.57
Solyc05g053090.1.1	Tomato	cytosol	27.51	19.92
Solyc06g082530.1.1	Tomato	cytosol	23.42	19.3
Solyc09g010920.1.1	Tomato	cytosol	27.14	19.19
Solyc06g076280.1.1	Tomato	cytosol	26.58	19.12
Solyc10g086530.1.1	Tomato	cytosol	26.58	18.79

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	UniProt:K4CHK6	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF57	EnsemblPlantsGene:Solyc07g065270.1	EnsemblPlants:Solyc07g065270.1.1	InterPro:TF_GRAS	UniParc:UPI000276CA4E

Description

Scarecrow-like protein 5 [Source:Projected from Arabidopsis thaliana (AT1G50600) UniProtKB/Swiss-Prot;Acc:Q8H125]

Coordinates

chr7:-:67097735..67099351

Molecular Weight (calculated)

60020.2 Da

IEP (calculated)

5.149

GRAVY (calculated)

-0.241

Length

538 amino acids

Sequence
(BLAST)

001: MRPSQNPEEI NEFNKFYNQP IEYQESYFLP SVNNPNNNQS FYADVSALKP AQHCYVESSA GNSSELVSDS PPIVNFNPMM NQGSDSCRSD MHHSPDDTFQ
101: SSGNSSCYTS DVTDLKHKLR ELETAMLGPD SESLESFNNT IPVTAANQVP SESDKLVGMM EMMPSGDLKE VLIACAKAIA ENNLITAEWL MSELRTVVSV
201: CGSPIQRLGA YMLEGLVARL ASSGSSIYKA LRCKEPTSVE LFSYMHLLYE ICPYFKFGYL SANGAIVDAM KDENSIHIID FQIAQGSQWI TLIHALAARP
301: GGPPRIRITG IDDSTSAYAR GGGIEIVGRR LSSIAASCNV PFEFHPVSAS CPDIEIEHLK VLPGEPLAVN FALVLHHMPD ESVGTQNHRD RLLRMVKSLS
401: PKIVTLVEQE SNTNTAQFFP RFLETLNYYL SVFESIDVAL PRDHKERINV EQHCLAREIV NILACEGAER VERHELLERW RSRFAVAGFK PYPLSSSVNA
501: TIKTLLENYY QSYTLNERNG ALYLGWMNRD LVASCAWK

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.