Factsheet for Solyc06g035620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P03610_001	Banana	cytosol	30.06	68.06
Solyc12g005340.1.1	Tomato	cytosol	91.1	53.23
PGSC0003DMT400056120	Potato	cytosol	89.88	52.41
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	78.22	43.74
KRH55599	Soybean	plastid	72.39	41.55
VIT_19s0014g04940.t01	Wine grape	cytosol	72.7	40.65
KRH25905	Soybean	cytosol, plastid	70.55	40.49
KRH22210	Soybean	cytosol, plastid	70.25	39.69
KRH27129	Soybean	plastid	67.79	39.39
GSMUA_Achr6P24310_001	Banana	cytosol	62.58	38.13
HORVU2Hr1G043780.1	Barley	cytosol	66.26	37.89
EER97346	Sorghum	cytosol	65.95	37.72
TraesCS2D01G220200.1	Wheat	cytosol	65.34	37.37
TraesCS2B01G239400.1	Wheat	cytosol	65.34	37.37
TraesCS2A01G214400.1	Wheat	cytosol	65.03	37.19
Os07t0545800-01	Rice	cytosol, nucleus	64.72	36.95
Solyc07g047950.1.1	Tomato	mitochondrion	59.82	35.78
Zm00001d006551_P001	Maize	golgi, mitochondrion	66.87	35.33
Solyc07g065270.1.1	Tomato	nucleus	58.28	35.32
Solyc11g012510.1.1	Tomato	mitochondrion	55.52	33.39
Solyc04g014830.1.1	Tomato	mitochondrion	52.76	31.1
Solyc04g011630.1.1	Tomato	cytosol	15.64	30.0
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	47.85	30.0
Solyc04g064550.1.1	Tomato	mitochondrion	47.24	27.35
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	46.01	25.73
Solyc06g036170.1.1	Tomato	nucleus	32.82	17.89
Solyc03g025170.1.1	Tomato	nucleus	33.13	17.12
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	16.26	15.92
Solyc01g100200.2.1	Tomato	nucleus	32.21	15.77
Solyc06g082530.1.1	Tomato	cytosol	30.98	15.47
Solyc06g076280.1.1	Tomato	cytosol	32.52	14.17
Solyc05g053090.1.1	Tomato	cytosol	31.29	13.73
Solyc10g086530.1.1	Tomato	cytosol	29.45	12.62
Solyc09g010920.1.1	Tomato	cytosol	28.83	12.35

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	UniProt:K4C4T4	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF18
EnsemblPlantsGene:Solyc06g035620.2	EnsemblPlants:Solyc06g035620.2.1	InterPro:TF_GRAS	UniParc:UPI0002765D4D	:	:

Description

No Description!

Coordinates

chr6:-:24667330..24668828

Molecular Weight (calculated)

36610.2 Da

IEP (calculated)

5.882

GRAVY (calculated)

-0.067

Length

326 amino acids

Sequence
(BLAST)

001: MEDLPLQGVP FSNLKSCLYV VSVTGDPIQR LGAYIVEGLV ERKELSGTTI YRSLKCKEPA EACRNEDRIH IIDFQIAQGT QWMILLQALA ARPGGALYVR
101: ITGIDDLVSQ YARGDGLAAV ARRLSAISEE FNIAVAFHAV PVFALEITWD MLDVRPGEAQ AVNFPLQLHH TPDESVDANN PRDGLIRMIK SLCPKIVTLV
201: EQESNTNTAP FLTRFVEALD YYHAMFESID VTLLRDMKER ITVEQHYLAR DIVNVIACEG KERVERHELL GKWKSRFKMA GFQQYPLSSF VNSVIKDLMK
301: RYSDHYTLVE QDGAMLICCG GGRSGI

Best Arabidopsis Sequence Match ( AT1G50600.3 )
(BLAST)

001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.