CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 5
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55599	Soybean	plastid	92.25	92.25
GSMUA_Achr8P03610_001	Banana	cytosol	19.72	77.78
KRH22210	Soybean	cytosol, plastid	73.42	72.27
KRH27129	Soybean	plastid	70.25	71.12
Solyc06g035620.2.1	Tomato	cytosol	40.49	70.55
VIT_19s0014g04940.t01	Wine grape	cytosol	70.42	68.61
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	66.02	64.32
PGSC0003DMT400049492	Potato	cytosol	64.96	63.4
Solyc12g005340.1.1	Tomato	cytosol	61.97	63.08
PGSC0003DMT400056120	Potato	cytosol	61.8	62.79
GSMUA_Achr6P24310_001	Banana	cytosol	55.99	59.44
EER97346	Sorghum	cytosol	57.57	57.37
Os07t0545800-01	Rice	cytosol, nucleus	56.51	56.22
HORVU2Hr1G043780.1	Barley	cytosol	55.99	55.79
TraesCS2B01G239400.1	Wheat	cytosol	55.99	55.79
TraesCS2D01G220200.1	Wheat	cytosol	55.28	55.09
TraesCS2A01G214400.1	Wheat	cytosol	55.11	54.91
Zm00001d006551_P001	Maize	golgi, mitochondrion	56.87	52.35
KRH74015	Soybean	cytosol	46.65	48.98
KRH14104	Soybean	cytosol	46.83	48.81
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	43.49	47.5
KRG98562	Soybean	nucleus	44.01	45.87
KRH46306	Soybean	cytosol	43.49	45.32
KRH73868	Soybean	cytosol	43.49	45.32
KRH14274	Soybean	cytosol	42.61	44.4
KRH51175	Soybean	cytosol	41.55	43.54
KRH01979	Soybean	cytosol	41.73	43.49
KRH11548	Soybean	nucleus	42.25	43.48
KRH36572	Soybean	cytosol	41.73	43.25
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	42.25	41.17
KRH18097	Soybean	cytosol	38.38	36.89
KRH15917	Soybean	cytosol	37.68	36.21
KRH64568	Soybean	cytosol	37.15	35.4
KRH53364	Soybean	cytosol	37.32	35.33
KRH38269	Soybean	cytosol	21.48	34.56
KRG91573	Soybean	plastid	26.23	25.08
KRH35251	Soybean	plastid	25.7	24.75
KRH08880	Soybean	plastid	26.94	23.29
KRH38397	Soybean	plastid	21.65	22.78
KRH29773	Soybean	cytosol	23.77	21.99
KRH10243	Soybean	nucleus	25.7	21.95
KRH23089	Soybean	cytosol	24.82	21.89
KRH23090	Soybean	vacuole	23.42	21.42
KRH29774	Soybean	cytosol	23.59	21.24
KRH24780	Soybean	cytosol	24.47	21.06
KRH29775	Soybean	nucleus	24.65	20.8
KRH24775	Soybean	cytosol	24.65	20.59
KRH10240	Soybean	cytosol	21.3	19.97
KRH23094	Soybean	cytosol	19.01	19.53
KRH24778	Soybean	nucleus	23.06	19.38
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	25.18	19.25
KRH29771	Soybean	cytosol	22.89	19.12
KRH24773	Soybean	nucleus	22.54	18.63
KRH29779	Soybean	cytosol	24.3	18.6
KRH10241	Soybean	cytosol, nucleus, peroxisome	22.36	18.46
KRH23095	Soybean	cytosol	21.13	18.26
KRH49113	Soybean	cytosol	23.59	18.26
KRG99969	Soybean	cytosol	23.42	18.05
KRH65839	Soybean	cytosol, plastid	23.06	17.95

Protein Annotations

EntrezGene:100797644	MapMan:15.5.12	EMBL:ACUP02007378	EnsemblPlantsGene:GLYMA_12G137700	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	UniProt:K7LUN8	EnsemblPlants:KRH25905
ProteinID:KRH25905	ProteinID:KRH25905.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF18
InterPro:TF_GRAS	UniParc:UPI00023D08A5	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:16408854..16412451

Molecular Weight (calculated)

63149.9 Da

IEP (calculated)

6.281

GRAVY (calculated)

-0.303

Length

568 amino acids

Sequence
(BLAST)

001: MDLNQFLNFN VISSEGFPCT SSCTPISPIS NQLLGSLKLD IGNSPNSALS SHFDSDTLSS ALSDSQELHT SGEIHSGVNS CKSLQESNHY LHRPVSFVDH
101: LQDGLHLSTR SFLPQDASYD HETRHALLEL ETALMAPDGE DQITTSSTSL GVGSRPTTSC QRNRSWSSEG QSSDVAHVEK HHKSVEEESL QGFPSCNLKQ
201: LLIVCAKALS ENNMQHFDQL IEKARSAVSI TGEPIQRLGA YLVEGLVARK EASGNNIYHA LRCREPEGKD LLSYMQLLYE ICPYLKFGYM AANGAIAEAC
301: RNEDQIHIID FQIGQGTQWV TLLQALAARP GGAPHVRITG IDDPLSKYVR GDGLEAVGKR LAAISQTFNI RVEFHGVPVL APDVTKDVLD VRPGEALAVN
401: FPLQLHHTAD ESVDMSNPRD GLLRLVKSLS PKVTTLVEQE SNTNTTPFFN RFIETLDYYL AMFESIDVSL PRKSKVQINM EQHCLARDIV NIIACEGKER
501: VERHELLGKW KSRLTMAGFR QYPLSSYMNS VIRSLLRCYS KHYNLVEKDG AMLLGWKDRN LISTSAWY

Best Arabidopsis Sequence Match ( AT1G50600.3 )
(BLAST)

001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.