CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35251	Soybean	plastid	88.89	89.49
KRH38397	Soybean	plastid	52.69	57.96
KRH08880	Soybean	plastid	62.12	56.16
CDY27821	Canola	cytosol	40.24	53.83
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	52.53	52.97
CDY00533	Canola	cytosol	39.56	52.69
Bra028312.1-P	Field mustard	cytosol	39.56	51.76
Solyc03g025170.1.1	Tomato	nucleus	50.0	47.07
Solyc06g036170.1.1	Tomato	nucleus	47.14	46.82
PGSC0003DMT400076932	Potato	nucleus	47.64	46.7
Bra022596.1-P	Field mustard	plastid	45.45	46.63
CDY27063	Canola	cytosol, plastid	45.12	46.53
CDX91655	Canola	cytosol	45.62	46.09
AT5G52510.1	Thale cress	nucleus	49.16	45.62
PGSC0003DMT400026240	Potato	nucleus, plastid	49.83	45.26
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	38.22	38.87
GSMUA_AchrUn_...	Banana	plastid	37.71	38.29
GSMUA_Achr9P18770_001	Banana	cytosol	36.2	37.79
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	35.19	37.19
GSMUA_Achr1P03650_001	Banana	mitochondrion	34.68	36.14
Os02t0681900-01	Rice	cytosol	35.52	34.14
Zm00001d002573_P001	Maize	cytosol	35.52	33.87
EES05727	Sorghum	cytosol	35.35	33.39
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	34.85	33.23
GSMUA_Achr4P24960_001	Banana	cytosol	26.94	32.99
Os04t0580300-01	Rice	cytosol, nucleus, plastid	34.34	32.96
Zm00001d051461_P001	Maize	cytosol	33.67	32.95
TraesCS2B01G413500.1	Wheat	cytosol	34.34	32.33
TraesCS2D01G393200.1	Wheat	cytosol	34.01	32.22
EES12703	Sorghum	cytosol, nucleus, plastid	35.02	31.9
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	33.84	31.85
KRH18097	Soybean	cytosol	30.13	30.29
KRH14104	Soybean	cytosol	27.78	30.28
KRH74015	Soybean	cytosol	27.44	30.13
KRH15917	Soybean	cytosol	29.97	30.12
KRH64568	Soybean	cytosol	29.63	29.53
KRH53364	Soybean	cytosol	29.8	29.5
HORVU2Hr1G094040.2	Barley	cytosol, plastid	18.69	28.83
KRH01979	Soybean	cytosol	25.93	28.26
KRH36572	Soybean	cytosol	25.93	28.1
KRH11548	Soybean	nucleus	26.09	28.08
KRH51175	Soybean	cytosol	25.42	27.86
KRH22210	Soybean	cytosol, plastid	26.94	27.73
KRH27129	Soybean	plastid	26.09	27.63
KRG98562	Soybean	nucleus	25.25	27.52
KRH46306	Soybean	cytosol	24.92	27.16
KRH55599	Soybean	plastid	25.76	26.94
KRH25905	Soybean	cytosol, plastid	25.08	26.23
KRH14274	Soybean	cytosol	23.74	25.87
KRH73868	Soybean	cytosol	23.4	25.5
KRH38269	Soybean	cytosol	10.44	17.56
KRH10240	Soybean	cytosol	17.85	17.49
KRH23089	Soybean	cytosol	18.86	17.39
KRH10243	Soybean	nucleus	19.19	17.14
KRH29773	Soybean	cytosol	17.68	17.1
KRH29771	Soybean	cytosol	19.19	16.76
KRH24773	Soybean	nucleus	19.36	16.74
KRH24780	Soybean	cytosol	18.35	16.52
KRH23094	Soybean	cytosol	15.32	16.46
KRH10241	Soybean	cytosol, nucleus, peroxisome	19.02	16.42
KRH23095	Soybean	cytosol	17.85	16.13
KRH23090	Soybean	vacuole	16.84	16.1
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	20.03	16.02
KRH49113	Soybean	cytosol	19.7	15.94
KRG99969	Soybean	cytosol	19.7	15.88
KRH29774	Soybean	cytosol	16.84	15.85
KRH24778	Soybean	nucleus	17.68	15.53
KRH65839	Soybean	cytosol, plastid	19.02	15.48
KRH29779	Soybean	cytosol	19.19	15.36
KRH24775	Soybean	cytosol	17.51	15.29
KRH29775	Soybean	nucleus	17.0	15.01

Protein Annotations

EntrezGene:100800097	MapMan:15.5.12	EMBL:ACUP02012691	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G162100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1NGX2	InterPro:IPR005202
EnsemblPlants:KRG91573	ProteinID:KRG91573	ProteinID:KRG91573.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF130	InterPro:Scarecrow-like_8	InterPro:TF_GRAS	UniParc:UPI000233D8E6	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:39978960..39981257

Molecular Weight (calculated)

65438.5 Da

IEP (calculated)

8.169

GRAVY (calculated)

-0.363

Length

594 amino acids

Sequence
(BLAST)

001: MSSPRFPGGG ASDFYGGAGG FPSQFTAVQP TMNNHSATTP RPLYRSQPSI LLNPSSHIAQ HQPSPLIGKR TLAEFQTHNL NSSNNNNNNP LLSNYLLRSV
101: KPRTFQHTEL STFPSNRYGL PLLHHLRPNA VNAQQQQPVT NSILPNTNYF PPVRSRLTAP HELEKNSIDR RLQELEKQLL EDNEDEQGDA VSVITNTTTT
201: SEWSHTIQNL ITPQKPTSSS PTSSTTSSNS SVESTSSKQS LTEAAIAISE GRFDTATEIL TRLLQNSDQR FVNCMVSALK SRMNHVECPP PVAELFSIEH
301: AESTQLLFEH SLFFKVARMV ANIAILESAL TENGKLCVLD FDIGDGNQYV SLLHELSARR KGAPSAVKIV AVAENGADER LNSVGLLLGR HAEKLGIGFE
401: FKVLIRRIAE LTRESLDCDA DEALAVNFAY KLYRMPDESV STENPRDELL RRVKALAPRV VTLVEQEANA NTAPFVARVS ELCAYYGALF DSLESTMARE
501: NSARVRIEEG LSRKVGNSVA CEGRNRVERC EVFGKWRARM SMAGFRLKPL SQRVAESIKA RLGGAGNRVA VKVENGGICF GWMGRTLTVA SAWC

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.