Factsheet for Os02t0681900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05727	Sorghum	cytosol	71.84	70.59
Zm00001d051461_P001	Maize	cytosol	67.64	68.86
Os04t0580300-01	Rice	cytosol, nucleus, plastid	63.43	63.33
GSMUA_AchrUn_...	Banana	plastid	46.93	49.57
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	46.76	49.49
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	44.34	48.75
GSMUA_Achr1P03650_001	Banana	mitochondrion	42.56	46.14
GSMUA_Achr9P18770_001	Banana	cytosol	42.39	46.05
GSMUA_Achr4P24960_001	Banana	cytosol	35.92	45.77
CDY27821	Canola	cytosol	30.58	42.57
CDY00533	Canola	cytosol	30.1	41.7
Bra028312.1-P	Field mustard	cytosol	30.26	41.19
CDY27063	Canola	cytosol, plastid	35.92	38.54
Bra022596.1-P	Field mustard	plastid	35.92	38.34
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	36.08	37.86
CDX91655	Canola	cytosol	35.6	37.41
Solyc06g036170.1.1	Tomato	nucleus	35.11	36.29
PGSC0003DMT400076932	Potato	nucleus	35.44	36.14
KRG91573	Soybean	plastid	34.14	35.52
Solyc03g025170.1.1	Tomato	nucleus	36.25	35.5
AT5G52510.1	Thale cress	nucleus	36.73	35.47
KRH35251	Soybean	plastid	33.5	35.08
PGSC0003DMT400026240	Potato	nucleus, plastid	36.08	34.1
KRH38397	Soybean	plastid	28.96	33.15
KRH08880	Soybean	plastid	34.3	32.27
Os01t0881500-01	Rice	cytosol	27.02	30.2
Os07t0583600-01	Rice	plasma membrane	23.46	26.65
Os03t0193000-01	Rice	plastid	22.98	26.54
Os07t0545800-01	Rice	cytosol, nucleus	22.65	24.52
Os11t0706200-00	Rice	nucleus	19.58	20.4
Os11t0705900-01	Rice	cytosol	19.58	18.85
Os11t0705200-01	Rice	cytosol	19.58	17.49
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	17.64	17.14
Os12t0573200-01	Rice	cytosol, plasma membrane	18.93	15.85
Os11t0139600-01	Rice	nucleus	14.89	15.78
Os03t0690600-03	Rice	cytosol	18.28	15.46
Os01t0842200-01	Rice	cytosol	18.45	13.9

Protein Annotations

MapMan:15.5.12	EntrezGene:4330327	EMBL:AY224426	ProteinID:BAD27826.1	ProteinID:BAF09662.1	ProteinID:BAS80307.1
ProteinID:EAZ24193.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	EnsemblPlantsGene:Os02g0681900	EnsemblPlants:Os02t0681900-01	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF127	UniProt:Q84PD5	InterPro:TF_GRAS	UniParc:UPI000005F89B	RefSeq:XP_015623156.1	SEG:seg

Description

GRAS transcription factor domain containing protein. (Os02t0681900-01)

Coordinates

chr2:-:27853890..27856029

Molecular Weight (calculated)

64204.2 Da

IEP (calculated)

9.317

GRAVY (calculated)

-0.115

Length

618 amino acids

Sequence
(BLAST)

001: MDPAGAPWCD PRRGYGGYGV GSAALQAAAR QQSQQPRSDG AGGAGVTGGV LKRSLGEMER WQQQRQVAAQ QAMYLRSVRQ RMDIGAVLGG AASSPAYGIS
101: GLSSGFGGIS QQQPSSTMSS LTTASRTVMP GMQQRRRMMA VPTAQNQAVA RAPAARPATA TELVLLQELE KQLLGDDEEA DAAGSGCGSG ITSSDWGDTI
201: QRLNSVTAAS SPSLPLPTAV NSTALLARSP TNSSSSTASS SASSSPPISA ASSRQLLSEA AAAVADGNHT AAASLLSALK LSANPRGDAE QRLVAMMVAA
301: LSSRVGTGPS QHLADLYSGE HRAACQLLQD VSPCFGLALH GANLAILDAV AGHRAIHLVD FDVSAAQHVA LIKALADRRV PATSLKVTVV ADPTSPFTPA
401: MTQSLAATCE RLKKLAQQAG IDFRFRAVSC RAPEIEASKL GCEPGEALAV NLAFTLSRVP DESVSPANPR DELLRRVRAL GPRVVTLVEQ ELNTNTAPMA
501: ARFSDASAHY GAVLESLDAT LGRDSADRTR AEAALASKVA NAVGREGPDR VERCEVFGKW RARFGMAGFR AVAIGEDIGG RVRARLGPAL PAFDVKLDNG
601: RLGVGWMGRV VTVASAWR

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.