Factsheet for GSMUA_Achr5P12810_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	73.84	71.06
GSMUA_AchrUn_...	Banana	plastid	71.0	68.21
GSMUA_Achr1P03650_001	Banana	mitochondrion	60.14	59.3
GSMUA_Achr9P18770_001	Banana	cytosol	56.76	56.06
GSMUA_Achr4P24960_001	Banana	cytosol	45.73	52.99
Zm00001d002573_P001	Maize	cytosol	50.0	45.1
GSMUA_Achr8P03610_001	Banana	cytosol	11.39	44.44
Os02t0681900-01	Rice	cytosol	48.75	44.34
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	49.11	44.3
CDY27821	Canola	cytosol	34.7	43.92
EES05727	Sorghum	cytosol	49.11	43.88
Os04t0580300-01	Rice	cytosol, nucleus, plastid	47.51	43.13
CDY00533	Canola	cytosol	34.16	43.05
Zm00001d051461_P001	Maize	cytosol	46.44	43.0
GSMUA_Achr6P11780_001	Banana	cytosol	26.16	42.98
Bra028312.1-P	Field mustard	cytosol	34.34	42.51
EES12703	Sorghum	cytosol, nucleus, plastid	49.11	42.33
TraesCS2B01G413500.1	Wheat	cytosol	47.15	42.0
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	46.98	41.84
TraesCS2D01G393200.1	Wheat	cytosol	46.62	41.79
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	41.99	40.07
Solyc03g025170.1.1	Tomato	nucleus	42.53	37.88
Solyc06g036170.1.1	Tomato	nucleus	40.21	37.79
CDY27063	Canola	cytosol, plastid	37.9	36.98
PGSC0003DMT400076932	Potato	nucleus	39.86	36.96
HORVU2Hr1G094040.2	Barley	cytosol, plastid	25.27	36.88
Bra022596.1-P	Field mustard	plastid	37.9	36.79
PGSC0003DMT400026240	Potato	nucleus, plastid	42.17	36.24
CDX91655	Canola	cytosol	37.54	35.88
KRG91573	Soybean	plastid	37.19	35.19
KRH38397	Soybean	plastid	33.27	34.63
AT5G52510.1	Thale cress	nucleus	38.97	34.22
KRH35251	Soybean	plastid	35.77	34.07
KRH08880	Soybean	plastid	39.15	33.49
GSMUA_Achr4P07010_001	Banana	cytosol	19.22	32.93
GSMUA_Achr10P...	Banana	cytosol	32.21	32.79
GSMUA_Achr3P02410_001	Banana	nucleus	32.21	30.83
GSMUA_Achr4P11050_001	Banana	nucleus	19.22	27.2
GSMUA_Achr6P24310_001	Banana	cytosol	25.44	26.73
GSMUA_AchrUn_...	Banana	nucleus	20.11	26.4
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	20.64	22.31
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	21.53	20.75
GSMUA_Achr5P08320_001	Banana	cytosol	14.41	18.04
GSMUA_Achr6P34090_001	Banana	nucleus	17.62	16.18
GSMUA_Achr10P...	Banana	cytosol	16.37	15.36
GSMUA_Achr10P...	Banana	nucleus	11.92	15.16
GSMUA_Achr8P02550_001	Banana	nucleus	10.14	14.54
GSMUA_Achr7P15080_001	Banana	cytosol	15.12	14.21
GSMUA_AchrUn_...	Banana	cytosol	15.48	13.2

Protein Annotations

EnsemblPlants:GSMUA_Achr5P12810_001	EnsemblPlants:GSMUA_Achr5T12810_001	EnsemblPlantsGene:GSMUA_Achr5G12810_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF4	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000295A3B0
UniProt:M0SY10	MapMan:15.5.12	:	:	:	:

Description

Putative Scarecrow-like protein 8 [Source:GMGC_GENE;Acc:GSMUA_Achr5G12810_001]

Coordinates

chr5:-:9155556..9157310

Molecular Weight (calculated)

60104.4 Da

IEP (calculated)

7.785

GRAVY (calculated)

-0.186

Length

562 amino acids

Sequence
(BLAST)

001: MASGFSGRCG VQSPIATRSE AGTGAILKRS LTERERLQQQ QQMQLQDALR SVKQRTLLAS SASSHLPPPP PVDLSSGSSS LTSSNFPASG FARRREMFFS
101: VTQTAAGSGS DNRPSAAIQD RLQELERQLF LDEDDEEDAV SASGSAVTTA EWSDAMQQLT SPPLPPPAAA VAAPNQLSPS PTNSSSTMLL DTAVAIADGN
201: VEAAAGNLAV LKRAANHRGD AEQRLTAVML PALVSCMNPP PTGNFCPSIA ELCSAEHFAA TQVLYELSPC FKLGLIAANL AILEATKDHP KIHILDFQFG
301: QGGQYLTFLH ALAERQRLRP TARSPVIRIT AVADPSSPFT RNNGGNLRAV GHQIEKLAER AGLAVRFGVV HRRPADLDAA ALGCEPGEAL AVNLAFALAR
401: IPDESVSPSN PRDELLRRVR ALRPRVVAMV EQEINTSTAA FAARFGEACA HYGALLESLD ATMARDSAER ARVEAWLARR AVNSVATEGA DRVERCEVFG
501: KWRARMGMAG FDPLPFGPAM IEPVKAKLAS VRSNPGFTIK EEGGRLGFAW KDRVLTVASS WR

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.