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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G04890.1 GSMUA_Achr10P... AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr10P... AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr10P... AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr10P... AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr11P... AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr2P01120_001 AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr3P09330_001 AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr3P25040_001 AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr5P07820_001 AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr5P27590_001 AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr6P15990_001 AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr6P23670_001 AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr8P05790_001 AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr9P17280_001 AT2G41100.1 17360592
AT2G04890.1 GSMUA_Achr10P... AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr10P... AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr10P... AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr10P... AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr11P... AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr2P01120_001 AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr3P09330_001 AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr3P25040_001 AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr5P07820_001 AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr5P27590_001 AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr6P15990_001 AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr6P23670_001 AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr8P05790_001 AT5G21274.1 17360592
AT2G04890.1 GSMUA_Achr9P17280_001 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr4P07010_001 Banana cytosol 68.51 82.93
GSMUA_AchrUn_... Banana nucleus 76.83 71.26
GSMUA_Achr8P03610_001 Banana cytosol 23.43 64.58
VIT_12s0057g00560.t01 Wine grape cytosol 68.01 49.54
Bra015156.1-P Field mustard cytosol 39.55 49.37
AT2G04890.1 Thale cress cytosol 50.13 48.18
CDY00883 Canola cytosol 48.61 47.65
TraesCS5A01G414000.1 Wheat cytosol 50.63 47.18
AT5G48150.4 Thale cress cytosol 57.93 46.94
TraesCS5A01G409800.1 Wheat nucleus, plastid 59.19 46.91
KRH14104 Soybean cytosol 63.98 46.61
KRH74015 Soybean cytosol 63.48 46.58
Os07t0583600-01 Rice plasma membrane 63.48 46.32
Bra026077.1-P Field mustard cytosol 34.26 46.26
VIT_19s0090g01740.t01 Wine grape cytosol 63.48 46.24
PGSC0003DMT400015696 Potato cytosol 62.22 46.17
Solyc07g047950.1.1 Tomato mitochondrion 63.22 46.05
CDY54511 Canola cytosol, nucleus, plastid 56.93 45.47
CDX86324 Canola cytosol, nucleus, plastid 56.68 45.27
CDY19966 Canola cytosol 55.92 44.94
CDY05700 Canola cytosol, plastid 56.17 44.87
Bra020715.1-P Field mustard cytosol, plastid 55.92 44.67
CDY00074 Canola cytosol, plastid 55.92 44.67
CDY71174 Canola cytosol, plastid 55.92 44.67
Bra036185.1-P Field mustard cytosol 55.67 44.65
Zm00001d048199_P001 Maize mitochondrion, nucleus 60.2 44.59
TraesCS2B01G217500.1 Wheat cytosol 62.22 44.58
EER97449 Sorghum cytosol 61.21 44.42
CDY71156 Canola cytosol, plastid 43.58 44.36
Zm00001d030500_P001 Maize nucleus 60.45 44.28
TraesCS2D01G198200.1 Wheat cytosol 61.71 44.14
EER95348 Sorghum cytosol 59.45 44.03
Os03t0193000-01 Rice plastid 59.19 43.93
Solyc07g065270.1.1 Tomato nucleus 59.45 43.87
TraesCS2A01G189600.1 Wheat cytosol 61.21 43.86
TraesCS5D01G419400.2 Wheat cytosol 60.71 43.82
PGSC0003DMT400057111 Potato nucleus 59.19 43.76
HORVU2Hr1G036280.1 Barley cytosol 61.21 43.63
Zm00001d006701_P001 Maize cytosol 60.45 43.32
Bra018860.1-P Field mustard nucleus 56.93 43.05
HORVU4Hr1G071670.1 Barley cytosol 57.68 42.72
Zm00001d021946_P001 Maize cytosol 59.95 42.65
TraesCS4D01G266400.1 Wheat cytosol 57.43 42.54
CDY22807 Canola nucleus 44.58 42.14
CDY37124 Canola nucleus 44.58 42.14
TraesCS4B01G266700.1 Wheat cytosol 56.93 42.09
KRG98562 Soybean nucleus 57.43 41.83
KRH14274 Soybean cytosol 57.43 41.83
VIT_00s0463g00020.t01 Wine grape nucleus 56.93 41.47
KRH73868 Soybean cytosol 56.68 41.28
KRH46306 Soybean cytosol 56.42 41.1
GSMUA_Achr6P11780_001 Banana cytosol 34.76 40.35
TraesCS4A01G039000.1 Wheat nucleus 48.87 39.67
PGSC0003DMT400060553 Potato cytosol 51.89 39.31
KRH11548 Soybean nucleus 54.16 38.95
KRH36572 Soybean cytosol 53.65 38.87
PGSC0003DMT400034763 Potato cytosol 52.14 38.76
Solyc11g012510.1.1 Tomato mitochondrion 52.39 38.38
HORVU5Hr1G099160.1 Barley plastid 60.71 38.25
KRH51175 Soybean cytosol 51.89 38.01
KRH01979 Soybean cytosol 52.14 37.98
AT1G50600.2 Thale cress golgi, mitochondrion 57.43 37.94
Solyc04g014830.1.1 Tomato mitochondrion 51.13 36.71
PGSC0003DMT400021748 Potato nucleus 51.13 36.31
CDY35589 Canola cytosol 47.61 35.59
CDY07309 Canola cytosol 21.41 35.42
Bra026237.1-P Field mustard plastid 47.36 35.14
CDY42968 Canola cytosol 47.1 34.95
GSMUA_Achr6P24310_001 Banana cytosol 47.1 34.95
AT4G17230.1 Thale cress cytosol 46.35 34.78
CDY58168 Canola plastid 46.35 34.72
Bra021063.1-P Field mustard plastid 46.35 34.72
CDY50128 Canola cytosol, plastid 46.35 34.52
GSMUA_Achr9P12070_001 Banana mitochondrion, plastid 44.84 34.23
KRH38269 Soybean cytosol 29.72 33.43
GSMUA_Achr10P... Banana cytosol 43.58 31.34
Solyc05g054170.2.1 Tomato mitochondrion, nucleus 25.19 30.03
GSMUA_Achr9P24710_001 Banana endoplasmic reticulum, plastid 42.57 28.99
GSMUA_Achr3P02410_001 Banana nucleus 42.07 28.45
GSMUA_Achr1P03650_001 Banana mitochondrion 28.46 19.82
GSMUA_Achr4P26400_001 Banana cytosol, mitochondrion, plastid 28.72 19.52
GSMUA_AchrUn_... Banana plastid 28.72 19.49
GSMUA_Achr9P18770_001 Banana cytosol 27.71 19.33
GSMUA_Achr5P12810_001 Banana cytosol, plastid 27.2 19.22
GSMUA_Achr8P02550_001 Banana nucleus 18.64 18.88
GSMUA_Achr5P08320_001 Banana cytosol 20.4 18.04
GSMUA_Achr10P... Banana nucleus 19.65 17.65
GSMUA_Achr4P24960_001 Banana cytosol 20.4 16.7
GSMUA_Achr6P34090_001 Banana nucleus 25.69 16.67
GSMUA_Achr10P... Banana cytosol 23.68 15.69
GSMUA_AchrUn_... Banana cytosol 24.43 14.72
GSMUA_Achr7P15080_001 Banana cytosol 19.65 13.04
Protein Annotations
EnsemblPlants:GSMUA_Achr4P11050_001EnsemblPlants:GSMUA_Achr4T11050_001EnsemblPlantsGene:GSMUA_Achr4G11050_001GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:CIGR2InterPro:IPR005202
InterPro:TF_GRASPANTHER:PTHR31636PANTHER:PTHR31636:SF31PFAM:PF03514PFscan:PS50985SEG:seg
UniParc:UPI00029669E2UniProt:M0SMX0MapMan:15.5.12:::
Description
Scarecrow-like transcription factor PAT1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G11050_001]
Coordinates
chr4:+:7959121..7960897
Molecular Weight (calculated)
44495.7 Da
IEP (calculated)
5.450
GRAVY (calculated)
-0.305
Length
397 amino acids
Sequence
(BLAST)
001: MPQNHQSSDY VSSDDGFQQR HVQPQTSHVP FCTLESSLAT ANCTTHNPPS SLSFSPISGS SMSQQDSVSD NANGSPVSAT IEDPSDLKNR LREIEAAMLG
101: PDLDTIGNSD NGYPGDLSLE PEKWRGVMET PRGDLKQFLI ACARAVAEND LIAVEWLISE LRQMVSVSGE PIQRLGAYLL EGLIARLASS GSSIYKALKC
201: KEPVSSDLLS YMHILYEVCP YFKFGYLSAN GAIVEAVKDE SVSTRNHRDR LLRMIKSVSP KVVTLVEHEA NTNTAPFFPR FLETLDYYTA IFDSIDVCLP
301: RENKERISVE QHCLARDIVN IIACEGAERV ERYELFGKWN SRFTMAGFRP YHLSPLVNAT IKTLLQNYSE HYRLEERDGI LYLGWKNRPL VVSCAWR
Best Arabidopsis Sequence Match ( AT2G04890.1 )
(BLAST)
001: MDNVRGSIML QPLPEIAESI DDAICHELSM WPDDAKDLLL IVEAISRGDL KLVLVACAKA VSENNLLMAR WCMGELRGMV SISGEPIQRL GAYMLEGLVA
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK
Arabidopsis Description
SCL21SCL21 [Source:UniProtKB/TrEMBL;Acc:A0A178VWV4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.