Factsheet for Bra020715.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71174	Canola	cytosol, plastid	100.0	100.0
AT5G48150.4	Thale cress	cytosol	88.13	89.39
Bra036185.1-P	Field mustard	cytosol	88.33	88.69
Bra015156.1-P	Field mustard	cytosol	47.08	73.58
Bra026077.1-P	Field mustard	cytosol	42.25	71.43
GSMUA_Achr4P07010_001	Banana	cytosol	44.27	67.07
VIT_12s0057g00560.t01	Wine grape	cytosol	70.83	64.59
PGSC0003DMT400015696	Potato	cytosol	68.81	63.93
KRH74015	Soybean	cytosol	69.01	63.4
KRH14104	Soybean	cytosol	69.01	62.94
Solyc07g047950.1.1	Tomato	mitochondrion	68.41	62.39
TraesCS5A01G414000.1	Wheat	cytosol	50.7	59.15
GSMUA_Achr4P11050_001	Banana	nucleus	44.67	55.92
Bra018860.1-P	Field mustard	nucleus	57.75	54.67
GSMUA_AchrUn_...	Banana	nucleus	46.88	54.44
TraesCS5A01G409800.1	Wheat	nucleus, plastid	54.53	54.09
Zm00001d048199_P001	Maize	mitochondrion, nucleus	55.53	51.49
Zm00001d030500_P001	Maize	nucleus	56.14	51.48
Os07t0583600-01	Rice	plasma membrane	55.94	51.1
Os03t0193000-01	Rice	plastid	54.93	51.03
EER95348	Sorghum	cytosol	54.73	50.75
HORVU4Hr1G071670.1	Barley	cytosol	54.12	50.19
TraesCS5D01G419400.2	Wheat	cytosol	55.33	50.0
HORVU2Hr1G036280.1	Barley	cytosol	55.94	49.91
TraesCS2B01G217500.1	Wheat	cytosol	55.53	49.82
TraesCS2A01G189600.1	Wheat	cytosol	55.53	49.82
TraesCS4D01G266400.1	Wheat	cytosol	53.72	49.81
TraesCS2D01G198200.1	Wheat	cytosol	55.33	49.55
Zm00001d021946_P001	Maize	cytosol	55.13	49.1
Zm00001d006701_P001	Maize	cytosol	54.73	49.1
EER97449	Sorghum	cytosol	53.92	48.99
TraesCS4B01G266700.1	Wheat	cytosol	52.92	48.98
TraesCS4A01G039000.1	Wheat	nucleus	47.48	48.26
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	39.44	48.04
HORVU5Hr1G099160.1	Barley	plastid	55.33	43.65
Bra021063.1-P	Field mustard	plastid	46.28	43.4
Bra026237.1-P	Field mustard	plastid	46.28	42.99
Bra012280.1-P	Field mustard	cytosol	40.85	36.98
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	19.92	31.23
Bra028312.1-P	Field mustard	cytosol	28.17	30.84
Bra022596.1-P	Field mustard	plastid	28.97	24.87
Bra015584.1-P	Field mustard	cytosol	20.93	23.85
Bra028391.1-P	Field mustard	nucleus	26.36	21.13
Bra033813.1-P	Field mustard	nucleus	23.74	20.27
Bra028390.1-P	Field mustard	cytosol	27.36	19.26
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	25.15	18.57
Bra035653.1-P	Field mustard	cytosol	26.76	18.42
Bra031581.1-P	Field mustard	cytosol	24.55	18.26
Bra031580.1-P	Field mustard	cytosol	24.55	17.68
Bra030688.1-P	Field mustard	nucleus	26.16	17.5

Protein Annotations

EMBL:AY184482	EnsemblPlants:Bra020715.1	EnsemblPlants:Bra020715.1-P	EnsemblPlantsGene:Bra020715	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF57	PFAM:PF03514	PFscan:PS50985	ProteinID:AAO26332
ProteinID:AAO26332.1	SEG:seg	UniParc:UPI000254614E	UniProt:M4DW21	MapMan:15.5.12	:

Description

AT5G48150 (E=2e-244) PAT1 | PAT1 (phytochrome a signal transduction 1); signal transducer/ transcription factor

Coordinates

chrA02:-:23555905..23557586

Molecular Weight (calculated)

55849.4 Da

IEP (calculated)

6.733

GRAVY (calculated)

-0.355

Length

497 amino acids

Sequence
(BLAST)

001: MYKHPRQEIE AYSLPANSVG KRRYVPVHNS RKRYCTPESS SPDSPAYDVL SNATALVSHN NSAYEDTSGS CVTDDFNDKI KELETVMMGP DSLDLVLDYN
101: DSFDSTSCQE TNTWRSTLEA VSRRDLRADL VSCAKAMSEN DLMMARSMME KLRLMVSVSG EPIERLGAYL LEGLVAQLSS SGSSIYKSLN QCPEPASTDL
201: LSYMHILYEV CPYFKFGYMS ANGAIAEAMK EENRVHIIDF QIGQGSQWVT LIQAFAARPG GPPRIRITGI DDTTSAYARG GGLNIVGNRL AKLAKQFNVP
301: FEFNSVSVSV SEVRPKNLGV RPGEALAVNF AFVLHHMPDE SVSTENHRDR LLRMVKSLSP KVVTLVEQES NTNTAAFFPR FKETMDYYDA MFESIDVTLP
401: RNHKQRINVE QHCLARDVVN IIACEGADRV ERHELLGKWR SRFGMAGFTP YPLSPLVNST IRSLLRNYSD KYRLEERDGA LYLGWMRRDL VASCAWK

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.