Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 85.68 | 72.85 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 48.12 | 62.5 |
| Bra026077.1-P | Field mustard | cytosol | 42.25 | 61.22 |
| Zm00001d030500_P001 | Maize | nucleus | 77.46 | 60.89 |
| Bra015156.1-P | Field mustard | cytosol | 45.31 | 60.69 |
| HORVU5Hr1G099160.1 | Barley | plastid | 84.98 | 57.46 |
| CDY00883 | Canola | cytosol | 54.23 | 57.04 |
| AT2G04890.1 | Thale cress | cytosol | 54.69 | 56.42 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 61.97 | 53.99 |
| CDY07309 | Canola | cytosol | 29.34 | 52.08 |
| AT5G48150.4 | Thale cress | cytosol | 59.86 | 52.04 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 59.15 | 50.7 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 59.15 | 50.7 |
| CDY05700 | Canola | cytosol, plastid | 59.15 | 50.7 |
| CDY71174 | Canola | cytosol, plastid | 59.15 | 50.7 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 59.15 | 50.7 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 47.18 | 50.63 |
| CDY19966 | Canola | cytosol | 58.45 | 50.4 |
| CDY00074 | Canola | cytosol, plastid | 58.69 | 50.3 |
| Bra036185.1-P | Field mustard | cytosol | 58.22 | 50.1 |
| PGSC0003DMT400015696 | Potato | cytosol | 61.97 | 49.35 |
| CDY71156 | Canola | cytosol, plastid | 45.07 | 49.23 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 62.68 | 48.99 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 62.21 | 48.62 |
| KRH14104 | Soybean | cytosol | 62.21 | 48.62 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 61.74 | 48.26 |
| KRH74015 | Soybean | cytosol | 61.27 | 48.24 |
| PGSC0003DMT400057111 | Potato | nucleus | 60.09 | 47.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.89 | 47.66 |
| Solyc07g065270.1.1 | Tomato | nucleus | 59.86 | 47.4 |
| CDY37124 | Canola | nucleus | 45.77 | 46.43 |
| CDY22807 | Canola | nucleus | 45.77 | 46.43 |
| PGSC0003DMT400060553 | Potato | cytosol | 56.57 | 45.99 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 58.69 | 45.87 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 59.39 | 45.67 |
| PGSC0003DMT400034763 | Potato | cytosol | 57.04 | 45.51 |
| Bra018860.1-P | Field mustard | nucleus | 55.63 | 45.14 |
| KRH14274 | Soybean | cytosol | 57.51 | 44.95 |
| KRH73868 | Soybean | cytosol | 57.51 | 44.95 |
| KRG98562 | Soybean | nucleus | 57.28 | 44.77 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 56.57 | 44.46 |
| KRH46306 | Soybean | cytosol | 56.57 | 44.22 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 56.1 | 43.22 |
| KRH01979 | Soybean | cytosol | 55.16 | 43.12 |
| KRH11548 | Soybean | nucleus | 55.4 | 42.75 |
| KRH36572 | Soybean | cytosol | 54.93 | 42.7 |
| KRH51175 | Soybean | cytosol | 53.76 | 42.25 |
| AT4G17230.1 | Thale cress | cytosol | 51.64 | 41.59 |
| CDY58168 | Canola | plastid | 51.41 | 41.32 |
| Bra021063.1-P | Field mustard | plastid | 51.41 | 41.32 |
| PGSC0003DMT400021748 | Potato | nucleus | 53.76 | 40.97 |
| CDY35589 | Canola | cytosol | 50.94 | 40.87 |
| CDY50128 | Canola | cytosol, plastid | 50.94 | 40.71 |
| Bra026237.1-P | Field mustard | plastid | 50.94 | 40.56 |
| CDY42968 | Canola | cytosol | 50.7 | 40.37 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 55.63 | 39.43 |
| TraesCS2A01G214400.1 | Wheat | cytosol | 52.58 | 39.3 |
| KRH38269 | Soybean | cytosol | 28.87 | 34.84 |
| TraesCS3A01G408000.1 | Wheat | cytosol | 44.37 | 34.24 |
| TraesCS5A01G505900.1 | Wheat | cytosol | 28.87 | 30.37 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 20.19 | 25.83 |
| TraesCS4A01G176400.1 | Wheat | cytosol | 28.64 | 24.5 |
| TraesCS4A01G176700.1 | Wheat | cytosol | 32.86 | 20.99 |
| TraesCS5A01G506000.1 | Wheat | cytosol | 29.58 | 20.86 |
| TraesCS2A01G395400.1 | Wheat | cytosol, mitochondrion, nucleus | 30.52 | 20.6 |
| TraesCS4A01G177100.1 | Wheat | nucleus | 29.58 | 19.6 |
| TraesCS5A01G506100.1 | Wheat | cytosol | 29.58 | 19.6 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 29.58 | 19.24 |
| TraesCS4A01G176500.1 | Wheat | cytosol | 22.07 | 18.88 |
| TraesCS4A01G176300.1 | Wheat | cytosol | 29.34 | 18.52 |
| TraesCS4A01G176600.1 | Wheat | cytosol | 27.7 | 18.18 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 30.28 | 18.02 |
| TraesCS7A01G173000.1 | Wheat | cytosol | 30.99 | 17.65 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 28.64 | 16.9 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 27.93 | 16.86 |
| TraesCS5A01G080300.1 | Wheat | cytosol | 28.87 | 16.53 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 30.05 | 16.49 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 27.23 | 16.09 |
| TraesCS3A01G360300.1 | Wheat | cytosol, extracellular, nucleus | 28.4 | 15.32 |
| TraesCS4A01G176200.1 | Wheat | peroxisome | 28.64 | 15.21 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G414000.1 | EnsemblPlantsGene:TraesCS5A01G414000 | InterPro:CIGR2 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF31 | PFAM:PF03514 | PFscan:PS50985 | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr5A:+:602003601..602004881
Molecular Weight (calculated)
47819.4 Da
IEP (calculated)
6.783
GRAVY (calculated)
-0.118
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPLDLNIIW FNSTLENAIL GPELDISCDS PKSLLQAKNL LKQGNWRQVL GINTGDLKQV IIACGKAAAE NDIHTEVLIS ELRQLVSISG DPMQRLGAYM
101: LEGLVARLSF SGSKLYKSLK CKEPTSSELI SHMHHLCEIC PFYRFSYMSA NGAIAEAIKS ENFVHIIDFH IAQGSQWITI IEALAARSGG PPCLRITGID
201: DSNSAYARGG GLDMVGTRLH SVSASCGMPF EFNAVHAASH EVYLEHLDIR PGEVIVVNFA YELHHTPDES VSTENHRNRI IRMIKSLSPR VVTLVEQESN
301: TNTAPFFSRY LETFEYYTAM FESIDVARPR DDKRRISTEQ HCLARDVINL IACEGAERVE RLEAFGKWKA RFAMAGFRPY PLSSLVNNTI KTLLDNYHSC
401: YRLEERDGVL YLGWKSRVLV VSSAWC
101: LEGLVARLSF SGSKLYKSLK CKEPTSSELI SHMHHLCEIC PFYRFSYMSA NGAIAEAIKS ENFVHIIDFH IAQGSQWITI IEALAARSGG PPCLRITGID
201: DSNSAYARGG GLDMVGTRLH SVSASCGMPF EFNAVHAASH EVYLEHLDIR PGEVIVVNFA YELHHTPDES VSTENHRNRI IRMIKSLSPR VVTLVEQESN
301: TNTAPFFSRY LETFEYYTAM FESIDVARPR DDKRRISTEQ HCLARDVINL IACEGAERVE RLEAFGKWKA RFAMAGFRPY PLSSLVNNTI KTLLDNYHSC
401: YRLEERDGVL YLGWKSRVLV VSSAWC
001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.