CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026077.1-P	Field mustard	cytosol	72.82	96.6
CDY37124	Canola	nucleus	93.59	86.9
CDY22807	Canola	nucleus	93.59	86.9
CDY07309	Canola	cytosol	41.54	67.5
AT1G50600.2	Thale cress	golgi, mitochondrion	93.85	60.9
GSMUA_Achr4P07010_001	Banana	cytosol	42.05	50.0
CDY00883	Canola	cytosol	50.77	48.89
CDX86324	Canola	cytosol, nucleus, plastid	61.79	48.49
CDY54511	Canola	cytosol, nucleus, plastid	61.54	48.29
CDY19966	Canola	cytosol	60.77	47.98
CDY71174	Canola	cytosol, plastid	61.03	47.89
CDY00074	Canola	cytosol, plastid	61.03	47.89
CDY05700	Canola	cytosol, plastid	61.03	47.89
VIT_19s0090g01740.t01	Wine grape	cytosol	65.13	46.61
KRH73868	Soybean	cytosol	64.1	45.87
TraesCS5A01G414000.1	Wheat	cytosol	49.23	45.07
Solyc07g065270.1.1	Tomato	nucleus	61.54	44.61
KRH14274	Soybean	cytosol	62.31	44.59
PGSC0003DMT400057111	Potato	nucleus	61.28	44.51
KRH46306	Soybean	cytosol	61.79	44.22
TraesCS5A01G409800.1	Wheat	nucleus, plastid	56.15	43.71
GSMUA_Achr4P11050_001	Banana	nucleus	44.36	43.58
KRG98562	Soybean	nucleus	60.77	43.49
Os07t0583600-01	Rice	plasma membrane	59.74	42.83
TraesCS2B01G217500.1	Wheat	cytosol	60.51	42.6
EER97449	Sorghum	cytosol	59.49	42.41
TraesCS2D01G198200.1	Wheat	cytosol	60.0	42.16
TraesCS2A01G189600.1	Wheat	cytosol	59.74	42.06
Zm00001d006701_P001	Maize	cytosol	59.74	42.06
Os03t0193000-01	Rice	plastid	57.69	42.06
HORVU2Hr1G036280.1	Barley	cytosol	59.49	41.65
Zm00001d021946_P001	Maize	cytosol	59.49	41.58
Zm00001d030500_P001	Maize	nucleus	57.18	41.14
GSMUA_AchrUn_...	Banana	nucleus	44.62	40.65
Zm00001d048199_P001	Maize	mitochondrion, nucleus	55.64	40.49
HORVU4Hr1G071670.1	Barley	cytosol	55.38	40.3
EER95348	Sorghum	cytosol	55.38	40.3
TraesCS4D01G266400.1	Wheat	cytosol	55.13	40.11
TraesCS5D01G419400.2	Wheat	cytosol	56.41	40.0
TraesCS4B01G266700.1	Wheat	cytosol	54.62	39.66
TraesCS4A01G039000.1	Wheat	nucleus	47.69	38.04
CDY35589	Canola	cytosol	50.51	37.1
CDY42968	Canola	cytosol	50.77	37.01
CDY50128	Canola	cytosol, plastid	49.74	36.4
CDY58168	Canola	plastid	49.23	36.23
HORVU5Hr1G099160.1	Barley	plastid	55.38	34.29
CDY00377	Canola	cytosol	44.36	31.45
CDY61060	Canola	cytosol	43.08	31.17
KRH38269	Soybean	cytosol	27.18	30.03
CDX80265	Canola	endoplasmic reticulum, golgi	24.36	29.97
CDY50240	Canola	cytosol	43.33	29.34
CDY68224	Canola	cytosol	43.33	29.34
CDX68389	Canola	cytosol	6.15	28.24
CDY27821	Canola	cytosol	31.79	27.93
CDY00533	Canola	cytosol	31.54	27.58
CDY27063	Canola	cytosol, plastid	34.87	23.61
CDX91655	Canola	cytosol	34.36	22.79
CDY71578	Canola	nucleus, plastid	26.67	19.96
CDY47877	Canola	nucleus	26.67	16.83
CDY47878	Canola	nucleus	29.49	16.64
CDY39530	Canola	cytosol	26.41	16.64
CDX82987	Canola	nucleus	25.64	16.64
CDY33040	Canola	nucleus	25.38	16.58
CDX86475	Canola	nucleus	30.0	16.48
CDY06266	Canola	cytosol	26.41	16.3
CDY07777	Canola	cytosol, nucleus, peroxisome	27.18	15.75
CDX79750	Canola	peroxisome	26.92	15.58
CDY15616	Canola	nucleus	28.21	15.38
CDX68388	Canola	cytosol	15.9	14.98
CDY06265	Canola	cytosol	26.41	14.93
CDY09912	Canola	cytosol	26.41	14.71
CDY31749	Canola	cytosol	27.18	14.6
CDX77228	Canola	cytosol	24.87	14.43
CDY09911	Canola	nucleus	17.44	11.64

Protein Annotations

EnsemblPlants:CDY71156	EnsemblPlantsGene:GSBRNA2T00011759001	GO:A0A078JZZ8	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF57	PFAM:PF03514	PFscan:PS50985	ProteinID:CDY71156	ProteinID:CDY71156.1
SEG:seg	UniParc:UPI0004EDE6AE	UniProt:A0A078JZZ8	MapMan:15.5.12	:	:

Description

BnaCnng71600DBnaCnng71600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JZZ8]

Coordinates

chrLK044700:-:333..2342

Molecular Weight (calculated)

43510.4 Da

IEP (calculated)

6.571

GRAVY (calculated)

-0.401

Length

390 amino acids

Sequence
(BLAST)

001: MNLSVQTFDS YCKLESSPGT KSHPCLNNNT SSTTSFSSNG NSSELNHSPE DNNNNYSPLS GSSATNNNEV ELTSSGSSIY KALRCKDPTG PELLTYMHIL
101: YEACPYFKFG YESANGAIAE AVKKERFVHI IDFQISQGGQ WVSLIRALGA RPGGPPRVRI TGIDDPRSSF ARQGGLELVG ERLGKLAEMY GVPFEFHGAA
201: LCCTEVEIEK LGVRNGEALA VNFPLVLHHM PDESVTVENH RDRLLRLVKR LSPNVVTLVE QEANTNTAPF LPRVVETMNH YLAVFESIDV KLARDHKERI
301: NVEQHCLARE VVNLVACEGV EREERHEPLG KWRSRFHMAG FKPFPLSSYV NATIKGLLES YSEKYTLEER DGALYLGWKN QPLVTSCAWR

Best Arabidopsis Sequence Match ( AT1G50600.1 )
(BLAST)

001: MRLSVFIIPL VESRQASGII NKQSTSLLIR FSLYLEASIS TKSFFSKSQR ISQTQSPICL SANYYQPDNL DMEATQKHMI QEGSSMFYHQ PSSVKQMDLS
101: VQTFDSYCTL ESSSGTKSHP CLNNKNNSSS TTSFSSNESP ISQANNNNLS RFNNHSPEEN NNSPLSGSSA TNTNETELSL MLKDLETAMM EPDVDNSYNN
201: QGGFGQQHGV VSSAMYRSME MISRGDLKGV LYECAKAVEN YDLEMTDWLI SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL
301: LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG GPPNVRITGI DDPRSSFARQ GGLELVGQRL GKLAEMCGVP
401: FEFHGAALCC TEVEIEKLGV RNGEALAVNF PLVLHHMPDE SVTVENHRDR LLRLVKHLSP NVVTLVEQEA NTNTAPFLPR FVETMNHYLA VFESIDVKLA
501: RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR SRFHMAGFKP YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.