Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95348 | Sorghum | cytosol | 95.15 | 95.15 |
| Os03t0193000-01 | Rice | plastid | 79.85 | 80.0 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 75.0 | 75.0 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 74.81 | 74.81 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 68.1 | 74.64 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 74.44 | 74.3 |
| Zm00001d030500_P001 | Maize | nucleus | 69.59 | 68.82 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 39.74 | 64.94 |
| Bra026077.1-P | Field mustard | cytosol | 35.45 | 64.63 |
| Bra015156.1-P | Field mustard | cytosol | 37.31 | 62.89 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 44.59 | 60.2 |
| CDY00883 | Canola | cytosol | 44.96 | 59.51 |
| AT2G04890.1 | Thale cress | cytosol | 45.71 | 59.32 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 58.4 | 57.43 |
| AT5G48150.4 | Thale cress | cytosol | 51.31 | 56.12 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 51.87 | 55.94 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.59 | 55.84 |
| CDY05700 | Canola | cytosol, plastid | 51.68 | 55.73 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 51.68 | 55.73 |
| CDY71156 | Canola | cytosol, plastid | 40.49 | 55.64 |
| CDY71174 | Canola | cytosol, plastid | 51.49 | 55.53 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 51.49 | 55.53 |
| CDY19966 | Canola | cytosol | 51.12 | 55.47 |
| CDY07309 | Canola | cytosol | 24.81 | 55.42 |
| CDY00074 | Canola | cytosol, plastid | 51.12 | 55.13 |
| PGSC0003DMT400015696 | Potato | cytosol | 54.85 | 54.95 |
| Bra036185.1-P | Field mustard | cytosol | 50.56 | 54.75 |
| KRH74015 | Soybean | cytosol | 55.04 | 54.53 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 55.41 | 54.5 |
| KRH14104 | Soybean | cytosol | 55.22 | 54.31 |
| CDY37124 | Canola | nucleus | 42.54 | 54.29 |
| CDY22807 | Canola | nucleus | 42.54 | 54.29 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 54.85 | 53.95 |
| Zm00001d006701_P001 | Maize | cytosol | 55.04 | 53.25 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 53.17 | 52.29 |
| Bra018860.1-P | Field mustard | nucleus | 50.93 | 52.0 |
| Zm00001d021946_P001 | Maize | cytosol | 53.73 | 51.61 |
| PGSC0003DMT400060553 | Potato | cytosol | 50.37 | 51.53 |
| KRG98562 | Soybean | nucleus | 51.68 | 50.83 |
| PGSC0003DMT400034763 | Potato | cytosol | 50.56 | 50.75 |
| Solyc07g065270.1.1 | Tomato | nucleus | 50.93 | 50.74 |
| PGSC0003DMT400057111 | Potato | nucleus | 50.75 | 50.65 |
| KRH14274 | Soybean | cytosol | 51.49 | 50.64 |
| KRH46306 | Soybean | cytosol | 51.12 | 50.28 |
| KRH73868 | Soybean | cytosol | 51.12 | 50.28 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 50.75 | 50.18 |
| KRH51175 | Soybean | cytosol | 50.56 | 50.0 |
| KRH01979 | Soybean | cytosol | 50.56 | 49.72 |
| KRH11548 | Soybean | nucleus | 50.19 | 48.73 |
| KRH36572 | Soybean | cytosol | 49.63 | 48.54 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 50.0 | 48.46 |
| AT4G17230.1 | Thale cress | cytosol | 47.2 | 47.83 |
| PGSC0003DMT400021748 | Potato | nucleus | 49.63 | 47.59 |
| CDY35589 | Canola | cytosol | 47.01 | 47.46 |
| CDY58168 | Canola | plastid | 46.46 | 46.98 |
| Bra021063.1-P | Field mustard | plastid | 46.46 | 46.98 |
| CDY42968 | Canola | cytosol | 46.64 | 46.73 |
| Bra026237.1-P | Field mustard | plastid | 46.46 | 46.54 |
| CDY50128 | Canola | cytosol, plastid | 46.08 | 46.34 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 50.93 | 45.42 |
| KRH38269 | Soybean | cytosol | 28.54 | 43.34 |
| Zm00001d006551_P001 | Maize | golgi, mitochondrion | 46.27 | 40.19 |
| Zm00001d038225_P001 | Maize | cytosol | 37.5 | 35.83 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 22.2 | 35.74 |
| Zm00001d030744_P001 | Maize | cytosol | 23.69 | 25.81 |
| Zm00001d051461_P001 | Maize | cytosol | 27.05 | 23.89 |
| Zm00001d034664_P001 | Maize | plastid | 24.44 | 23.43 |
| Zm00001d026050_P001 | Maize | mitochondrion, nucleus, plastid | 25.56 | 21.99 |
| Zm00001d048681_P001 | Maize | cytosol | 23.32 | 21.97 |
| Zm00001d002573_P001 | Maize | cytosol | 25.37 | 21.83 |
| Zm00001d011070_P001 | Maize | cytosol | 25.0 | 21.37 |
| Zm00001d003553_P001 | Maize | cytosol | 23.88 | 21.09 |
| Zm00001d035671_P001 | Maize | cytosol | 24.63 | 21.09 |
| Zm00001d048588_P001 | Maize | cytosol | 23.51 | 19.87 |
| Zm00001d007248_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 19.96 | 19.78 |
| Zm00001d048601_P001 | Maize | cytosol | 23.51 | 19.63 |
| Zm00001d007713_P001 | Maize | cytosol | 21.27 | 19.03 |
| Zm00001d048682_P001 | Maize | nucleus | 22.2 | 18.92 |
| Zm00001d048600_P001 | Maize | nucleus | 22.76 | 18.91 |
| Zm00001d041536_P001 | Maize | cytosol | 25.0 | 18.87 |
| Zm00001d048602_P001 | Maize | cytosol | 23.13 | 18.62 |
| Zm00001d028603_P001 | Maize | cytosol | 25.0 | 18.26 |
| Zm00001d035670_P001 | Maize | cytosol | 24.07 | 17.77 |
| Zm00001d033166_P001 | Maize | nucleus | 23.32 | 17.08 |
| Zm00001d048604_P001 | Maize | cytosol | 23.69 | 16.6 |
| Zm00001d042907_P001 | Maize | cytosol | 24.44 | 16.19 |
| Zm00001d047813_P002 | Maize | nucleus | 24.63 | 15.92 |
| Zm00001d048603_P001 | Maize | cytosol | 25.37 | 9.56 |
Protein Annotations
| EnsemblPlants:Zm00001d048199_P001 | EnsemblPlants:Zm00001d048199_T001 | EnsemblPlantsGene:Zm00001d048199 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:CIGR2 | InterPro:IPR005202 |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF31 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:AQL09101.1 |
| SEG:seg | UniParc:UPI0008432EEE | UniProt:A0A1D6PIF4 | MapMan:15.5.12 | : | : |
Description
GRAS-transcription factor 45
Coordinates
chr9:-:152292837..152294447
Molecular Weight (calculated)
59752.7 Da
IEP (calculated)
6.256
GRAVY (calculated)
-0.308
Length
536 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTQASNRSY RYPDRTQLPY HNGNPMHVGG NGNYCVQQNH DDVNYISSDD GSQSSSSRVQ DFQAQFCTLD SSSANCVYPA HSSTSSQSIS GSPLSQQESH
101: SDHAYGSSPS ASCITQVPTW TLKDLENVML GPDSDIGSPD SSFLLDTALH GNNWRELLGI QTGDLRQVIV ACGKAVDENA VYMDALMSEL REMVSVSGEP
201: MQRLGAYMLE GLIARLSFTG HALYKSLKCK EPVATSSELL SYMHLLYEIC PFFKFGYMSA NGAIAEAVKG EDIIHIIDFQ IAQGSQWMTM IQALASRPGR
301: RPYLRITGID DSNSAHARGG GLDMVGQRLH RMAQSCGLPF EFNAVPAASH EVVFEDLCLR SGEAIVVNFA YQLHHTPDES VGIENHRDRI LRMVKSLSPK
401: VVTLVEQEAN TNTAPFFLRY METLDYYTAM FEAIDVACPR DDKKRISTEQ HCVARDIVNL IACEGAERIE RHEPFGKWRA RLVMAGFRPY PLSPVVNRTI
501: KTLLDSYHSH YRLEERDGIL YLGWKNRKLV VSSAWC
101: SDHAYGSSPS ASCITQVPTW TLKDLENVML GPDSDIGSPD SSFLLDTALH GNNWRELLGI QTGDLRQVIV ACGKAVDENA VYMDALMSEL REMVSVSGEP
201: MQRLGAYMLE GLIARLSFTG HALYKSLKCK EPVATSSELL SYMHLLYEIC PFFKFGYMSA NGAIAEAVKG EDIIHIIDFQ IAQGSQWMTM IQALASRPGR
301: RPYLRITGID DSNSAHARGG GLDMVGQRLH RMAQSCGLPF EFNAVPAASH EVVFEDLCLR SGEAIVVNFA YQLHHTPDES VGIENHRDRI LRMVKSLSPK
401: VVTLVEQEAN TNTAPFFLRY METLDYYTAM FEAIDVACPR DDKKRISTEQ HCVARDIVNL IACEGAERIE RHEPFGKWRA RLVMAGFRPY PLSPVVNRTI
501: KTLLDSYHSH YRLEERDGIL YLGWKNRKLV VSSAWC
001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
Arabidopsis Description
PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.