Factsheet for Zm00001d047813_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028603_P001	Maize	cytosol	82.63	93.32
OQU92829	Sorghum	cytosol	81.66	92.23
Os03t0690600-03	Rice	cytosol	73.94	83.86
TraesCS5D01G152700.1	Wheat	cytosol, plastid	71.77	76.87
TraesCS5A01G139000.1	Wheat	cytosol, plastid	71.89	76.8
TraesCS5B01G138100.1	Wheat	cytosol, plastid	71.89	76.8
HORVU5Hr1G045020.29	Barley	cytosol	72.01	75.86
Solyc04g011630.1.1	Tomato	cytosol	13.87	67.65
GSMUA_Achr10P...	Banana	nucleus	35.95	67.42
GSMUA_Achr10P...	Banana	cytosol	46.2	63.94
GSMUA_Achr7P15080_001	Banana	cytosol	45.84	63.55
CDX68389	Canola	cytosol	6.15	60.0
Zm00001d030744_P001	Maize	cytosol	32.21	54.27
VIT_06s0004g04990.t01	Wine grape	cytosol	28.11	52.71
PGSC0003DMT400049420	Potato	cytosol	41.38	51.66
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	19.3	50.47
CDX80265	Canola	endoplasmic reticulum, golgi	19.18	50.16
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	42.82	50.07
Zm00001d034664_P001	Maize	plastid	33.41	49.55
VIT_13s0019g01810.t01	Wine grape	cytosol	43.55	48.26
PGSC0003DMT400005480	Potato	cytosol	28.35	48.25
KRH10240	Soybean	cytosol	34.98	47.85
PGSC0003DMT400016258	Potato	cytosol	41.86	47.66
Zm00001d035671_P001	Maize	cytosol	35.95	47.6
KRH65839	Soybean	cytosol, plastid	41.86	47.53
VIT_13s0019g01780.t01	Wine grape	nucleus	34.38	47.5
Zm00001d011070_P001	Maize	cytosol	35.59	47.05
PGSC0003DMT400022997	Potato	cytosol, plastid	42.46	46.25
Solyc09g010920.1.1	Tomato	cytosol	42.46	46.25
Solyc10g086530.1.1	Tomato	cytosol	42.46	46.25
KRH24780	Soybean	cytosol	36.79	46.21
KRH49113	Soybean	cytosol	40.89	46.19
VIT_13s0019g01710.t01	Wine grape	cytosol	40.29	45.94
KRH23094	Soybean	cytosol	30.52	45.75
KRG99969	Soybean	cytosol	40.65	45.73
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	37.03	45.62
CDY07777	Canola	cytosol, nucleus, peroxisome	37.03	45.62
CDX79750	Canola	peroxisome	36.91	45.4
VIT_13s0019g01700.t01	Wine grape	cytosol	41.62	45.39
CDY71578	Canola	nucleus, plastid	28.47	45.3
KRH29773	Soybean	cytosol	33.53	45.28
VIT_13s0019g01790.t01	Wine grape	cytosol	38.84	44.78
PGSC0003DMT400069949	Potato	cytosol	40.29	44.71
Solyc05g053090.1.1	Tomato	cytosol	39.81	44.41
KRH29771	Soybean	cytosol	36.43	44.41
VIT_06s0004g04970.t01	Wine grape	cytosol	34.74	43.77
PGSC0003DMT400077972	Potato	cytosol	39.69	43.75
KRH23095	Soybean	cytosol	34.62	43.68
KRH24773	Soybean	nucleus	36.19	43.67
AT2G37650.1	Thale cress	cytosol	37.76	43.59
VIT_06s0004g04980.t01	Wine grape	nucleus	36.91	43.47
Zm00001d041536_P001	Maize	cytosol	37.03	43.24
KRH29775	Soybean	nucleus	35.1	43.24
Solyc06g076280.1.1	Tomato	cytosol	38.96	43.18
AT2G29065.1	Thale cress	cytosol, nucleus, plastid	32.81	43.17
Bra028391.1-P	Field mustard	nucleus	32.21	43.06
KRH24778	Soybean	nucleus	35.1	43.05
CDY47877	Canola	nucleus	32.09	43.04
VIT_06s0004g04950.t01	Wine grape	cytosol	39.08	42.97
CDY39530	Canola	cytosol	31.97	42.81
KRH24775	Soybean	cytosol	34.98	42.65
Zm00001d042907_P001	Maize	cytosol	41.62	42.65
KRH29774	Soybean	cytosol	32.45	42.63
AT3G46600.1	Thale cress	cytosol	29.79	42.37
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	32.81	42.11
Bra015584.1-P	Field mustard	cytosol	22.07	41.97
KRH29779	Soybean	cytosol	37.52	41.91
CDX86475	Canola	nucleus	35.59	41.55
CDY47878	Canola	nucleus	34.62	41.53
Bra028390.1-P	Field mustard	cytosol	34.98	41.08
AT2G29060.1	Thale cress	cytosol	34.38	41.07
Solyc01g100200.2.1	Tomato	nucleus	32.69	40.69
CDX77228	Canola	cytosol	32.81	40.48
KRH10243	Soybean	nucleus	32.33	40.3
Zm00001d048601_P001	Maize	cytosol	31.0	40.03
Bra035653.1-P	Field mustard	cytosol	34.86	40.03
Solyc06g082530.1.1	Tomato	cytosol	31.48	39.97
KRH23089	Soybean	cytosol	31.0	39.91
Bra033813.1-P	Field mustard	nucleus	27.99	39.86
CDY15616	Canola	nucleus	34.38	39.86
CDY31749	Canola	cytosol	34.86	39.81
Zm00001d035670_P001	Maize	cytosol	34.86	39.81
Bra030688.1-P	Field mustard	nucleus	35.59	39.7
AT5G59450.1	Thale cress	nucleus	29.19	39.67
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	35.34	39.43
PGSC0003DMT400078286	Potato	nucleus	31.73	39.43
CDX82987	Canola	nucleus	28.47	39.27
Zm00001d033166_P001	Maize	nucleus	34.62	39.21
CDY06266	Canola	cytosol	29.79	39.08
CDY33040	Canola	nucleus	28.11	39.03
VIT_06s0004g04960.t01	Wine grape	nucleus	37.39	38.9
KRH10241	Soybean	cytosol, nucleus, peroxisome	32.21	38.81
AT1G07530.1	Thale cress	cytosol	35.71	38.49
KRH23090	Soybean	vacuole	28.83	38.49
Zm00001d048604_P001	Maize	cytosol	35.46	38.43
Zm00001d003553_P001	Maize	cytosol	27.86	38.06
AT1G07520.3	Thale cress	cytosol	31.85	37.93
Zm00001d048600_P001	Maize	nucleus	29.19	37.52
Bra031581.1-P	Field mustard	cytosol	30.16	37.43
Zm00001d048588_P001	Maize	cytosol	28.59	37.38
CDY06265	Canola	cytosol	30.64	36.81
Bra031580.1-P	Field mustard	cytosol	30.52	36.67
CDY09912	Canola	cytosol	30.76	36.43
Zm00001d048602_P001	Maize	cytosol	28.71	35.74
Zm00001d007248_P001	Maize	cytosol, endoplasmic reticulum, nucleus	23.16	35.49
Zm00001d048681_P001	Maize	cytosol	24.13	35.15
Zm00001d048682_P001	Maize	nucleus	25.69	33.86
CDX68388	Canola	cytosol	16.89	33.82
Zm00001d007713_P001	Maize	cytosol	23.88	33.06
CDY09911	Canola	nucleus	23.04	32.71
Zm00001d006701_P001	Maize	cytosol	17.49	26.17
Zm00001d021946_P001	Maize	cytosol	17.49	25.99
Zm00001d030500_P001	Maize	nucleus	16.41	25.09
Zm00001d048199_P001	Maize	mitochondrion, nucleus	15.92	24.63
Zm00001d038225_P001	Maize	cytosol	16.04	23.71
Zm00001d006551_P001	Maize	golgi, mitochondrion	15.2	20.42
Zm00001d048603_P001	Maize	cytosol	34.5	20.1
Zm00001d051461_P001	Maize	cytosol	13.63	18.62
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	13.03	17.34
Zm00001d002573_P001	Maize	cytosol	12.91	17.18

Protein Annotations

EnsemblPlants:Zm00001d047813_P002	EnsemblPlants:Zm00001d047813_T002	EnsemblPlantsGene:Zm00001d047813	EntrezGene:100381402	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF44	PFAM:PF03514	PFscan:PS50985	ProteinID:AQL07695.1
SEG:seg	UniParc:UPI0008423D66	UniProt:A0A1D6PDQ1	MapMan:15.5.12	:	:

Description

GRAS-transcription factor 1

Coordinates

chr9:+:142473442..142477283

Molecular Weight (calculated)

92007.5 Da

IEP (calculated)

6.867

GRAVY (calculated)

-0.369

Length

829 amino acids

Sequence
(BLAST)

001: MPVPTSGCIT SSPTPSTTTG GAPPAAPAPV PAQAEARATR TGLLFLSGVP SCKVTLSSVL NLTLIGKLVY GYCKLRSIIV ANGRSSGEEV TCRLPMGLDN
101: TYGELSGMFY GGLSYDGYAD HSSASDYFRF ADPLPAVVPQ MAAEACSNPS STVSRANTEA DNPEDWEFIS DESLNYISRM LMEEDIDEKV SMYQAESAAL
201: RAAAKPFYDI LGHKFPPSPD RQVMPWPMDS PSESSGSICT QSVASAVTSS SVGGTVDSNR CYDVGHSEQL EAFRGLCGQS SHPLVGASSD ASNAVGELED
301: ILITNGGIPE YLFESLPTWD FRRGIEEAQK SLPVSDKLVI DLETGGIARP QEARKDVPMN AKKDDVLKAK KNRQSEDLDL MEGRNIKQSA FCSDEPGWIE
401: MFDDLLRQTE KKATVLRELM RSEASKNSQV TQMKGPSGPR PRGRKPTKND VVDLRTILIH CAQAVAADDR RTANELLKQI RHHSKPNGDG TQRLAHCFAD
501: GLEARLAGTG SQLYRKLIAK RTTASDMLKA YHLFLAASPF KRLSHFLSNQ TILSLTKNAS KVHIIDFGIY FGFQWPCLIR RLSKREGGPP VLRITGIDVP
601: QPGFRPTERI EETGQRLAEY AEKFKVPFEY QGIASKWESI RVEDLKVGKD EVVIVNCLYR FRNLIDETVA VDSPRNRVLN TIRQVNPAIF IHGIVNGSYS
701: VPFFITRFRE ALFHFSALFD MLETTVPRDD AQRALIEREM FGREALNVIA CEGSDRVERP ETYKQWQVRN LRAGFVQSPL NQEIVMKAMD KVKDIYHKDF
801: VIDEDNGWLL QGWKGRILYA ISTWKPKNN

Best Arabidopsis Sequence Match ( AT2G37650.2 )
(BLAST)

001: MVNRNRLSGL PDQPSSHSFT PVTLYDGFNY NLSSDHINTV VAAPENSVFI REEEEEEDPA DDFDFSDAVL GYISQMLNEE DMDDKVCMLQ ESLDLEAAER
101: SLYEAIGKKY PPSPERNLAF AERNSENLDR VVPGNYTGGD CIGFGNGGIK PLSSGFTLDF RNPQSCSSIL SVPQSNGLIT IYGDGIDESS KNNRENHQSV
201: WLFRREIEEA NRFNPEENEL IVNFREENCV SKARKNSSRD EICVEEERSS KLPAVFGEDI LRSDVVDKIL VHVPGGESMK EFNALRDVLK KGVEKKKASD
301: AQGGKRRARG RGRGRGRGGG GGQNGKKEVV DLRSLLIHCA QAVAADDRRC AGQLLKQIRL HSTPFGDGNQ RLAHCFANGL EARLAGTGSQ IYKGIVSKPR
401: SAAAVLKAHQ LFLACCPFRK LSYFITNKTI RDLVGNSQRV HVIDFGILYG FQWPTLIHRF SMYGSPKVRI TGIEFPQPGF RPAQRVEETG QRLAAYAKLF
501: GVPFEYKAIA KKWDAIQLED LDIDRDEITV VNCLYRAENL HDESVKVESC RDTVLNLIGK INPDLFVFGI VNGAYNAPFF VTRFREALFH FSSIFDMLET
601: IVPREDEERM FLEMEVFGRE ALNVIACEGW ERVERPETYK QWHVRAMRSG LVQVPFDPSI MKTSLHKVHT FYHKDFVIDQ DNRWLLQGWK GRTVMALSVW
701: KPESKA

Arabidopsis Description

SCL9Scarecrow-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80933]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.