Factsheet for VIT_06s0004g04960.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04950.t01	Wine grape	cytosol	73.78	77.98
KRH24780	Soybean	cytosol	46.67	56.36
VIT_06s0004g04990.t01	Wine grape	cytosol	29.49	53.17
GSMUA_Achr10P...	Banana	nucleus	28.61	51.58
CDY71578	Canola	nucleus, plastid	33.5	51.25
CDX86475	Canola	nucleus	45.29	50.85
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	45.04	50.63
KRH29779	Soybean	cytosol	46.8	50.27
Bra030688.1-P	Field mustard	nucleus	46.42	49.8
CDY15616	Canola	nucleus	44.54	49.65
CDY47878	Canola	nucleus	42.66	49.2
AT2G29060.1	Thale cress	cytosol	42.66	48.99
Bra028390.1-P	Field mustard	cytosol	42.66	48.16
VIT_13s0019g01810.t01	Wine grape	cytosol	45.17	48.13
AT1G07530.1	Thale cress	cytosol	46.3	47.98
Bra035653.1-P	Field mustard	cytosol	43.16	47.65
GSMUA_Achr10P...	Banana	cytosol	35.76	47.58
CDY31749	Canola	cytosol	43.04	47.25
CDX77228	Canola	cytosol	39.4	46.73
VIT_13s0019g01780.t01	Wine grape	nucleus	34.63	46.0
GSMUA_Achr7P15080_001	Banana	cytosol	34.38	45.82
VIT_13s0019g01710.t01	Wine grape	cytosol	41.53	45.53
VIT_13s0019g01700.t01	Wine grape	cytosol	42.91	45.0
VIT_06s0004g04970.t01	Wine grape	cytosol	37.01	44.83
KRH10243	Soybean	nucleus	37.39	44.81
VIT_13s0019g01790.t01	Wine grape	cytosol	40.4	44.78
Zm00001d034664_P001	Maize	plastid	31.24	44.54
GSMUA_Achr8P02550_001	Banana	nucleus	21.83	44.39
GSMUA_Achr6P34090_001	Banana	nucleus	33.88	44.12
KRH23089	Soybean	cytosol	35.26	43.63
TraesCS1B01G037500.1	Wheat	cytosol	22.58	43.58
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	34.63	43.4
OQU92829	Sorghum	cytosol	39.52	42.92
KRH23090	Soybean	vacuole	33.25	42.67
Zm00001d028603_P001	Maize	cytosol	39.27	42.64
Os03t0690600-03	Rice	cytosol	38.77	42.27
VIT_06s0004g04980.t01	Wine grape	nucleus	36.89	41.76
KXG37250	Sorghum	cytosol	34.0	41.63
HORVU3Hr1G012520.1	Barley	cytosol	23.71	41.45
KXG38103	Sorghum	cytosol	31.87	40.58
TraesCS5B01G494500.1	Wheat	cytosol	33.25	40.33
HORVU5Hr1G113620.1	Barley	cytosol, nucleus, peroxisome	32.5	40.22
TraesCS5A01G481300.1	Wheat	cytosol	33.0	40.15
TraesCS5D01G494900.1	Wheat	cytosol	33.0	40.03
KXG21079	Sorghum	cytosol	31.12	39.81
Zm00001d011070_P001	Maize	cytosol	31.12	39.55
KXG21080	Sorghum	cytosol	30.87	39.3
Zm00001d035671_P001	Maize	cytosol	30.74	39.14
GSMUA_AchrUn_...	Banana	cytosol	31.87	38.54
TraesCS5A01G139000.1	Wheat	cytosol, plastid	37.26	38.27
HORVU5Hr1G045020.29	Barley	cytosol	37.52	37.99
TraesCS5D01G152700.1	Wheat	cytosol, plastid	36.89	37.98
TraesCS5B01G138100.1	Wheat	cytosol, plastid	36.89	37.89
Zm00001d047813_P002	Maize	nucleus	38.9	37.39
HORVU3Hr1G012550.6	Barley	cytosol	26.73	35.74
TraesCS1D01G030800.1	Wheat	cytosol	30.74	34.95
TraesCS1B01G037300.1	Wheat	cytosol	30.87	34.94
TraesCS1D01G030900.1	Wheat	cytosol	31.12	34.78
HORVU1Hr1G004440.1	Barley	cytosol	31.24	34.63
OQU91407	Sorghum	nucleus	29.74	34.55
TraesCS1A01G030300.1	Wheat	cytosol	30.24	34.14
TraesCS1A01G030200.1	Wheat	cytosol	30.74	33.98
TraesCS1D01G031000.1	Wheat	cytosol	30.87	33.93
TraesCS1B01G037400.1	Wheat	cytosol	30.61	33.75
Zm00001d033166_P001	Maize	nucleus	30.99	33.74
OQU91406	Sorghum	nucleus	31.24	33.29
TraesCS1D01G031200.1	Wheat	cytosol	30.36	33.2
TraesCS3D01G067800.1	Wheat	nucleus	28.11	33.14
KXG38064	Sorghum	nucleus	29.86	33.06
EER91260	Sorghum	nucleus	29.86	33.01
Zm00001d035670_P001	Maize	cytosol	29.86	32.78
EES18882	Sorghum	cytosol	30.11	32.74
TraesCS3D01G067900.1	Wheat	nucleus	28.23	32.61
TraesCS1B01G037200.1	Wheat	nucleus	30.74	32.36
EES18880	Sorghum	cytosol	29.86	32.12
TraesCS3D01G067700.1	Wheat	cytosol	28.98	31.99
TraesCS3B01G080900.1	Wheat	nucleus	28.86	31.9
TraesCS3A01G067900.1	Wheat	cytosol	28.73	31.72
TraesCS3B01G081000.1	Wheat	cytosol	28.86	31.59
TraesCS3B01G081100.1	Wheat	nucleus	28.11	31.33
TraesCS3A01G068000.1	Wheat	nucleus	28.11	31.28
VIT_19s0090g01740.t01	Wine grape	cytosol	19.7	28.81
VIT_12s0057g00560.t01	Wine grape	cytosol	18.7	27.34
VIT_00s0463g00020.t01	Wine grape	nucleus	18.44	26.97
VIT_19s0014g04940.t01	Wine grape	cytosol	18.7	25.56
VIT_04s0044g01370.t01	Wine grape	nucleus	16.69	23.42
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	15.93	22.48
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	13.93	18.85

Protein Annotations

EntrezGene:100262198	wikigene:100262198	MapMan:15.5.12	ProteinID:CCB43560	ProteinID:CCB43560.1	UniProt:F6GV01
EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	EntrezGene:LOC100262198	wikigene:LOC100262198	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF132	InterPro:TF_GRAS	UniParc:UPI0002109789	ArrayExpress:VIT_06s0004g04960	EnsemblPlantsGene:VIT_06s0004g04960	EnsemblPlants:VIT_06s0004g04960.t01
RefSeq:XP_002283383	RefSeq:XP_002283383.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:5925541..5928852

Molecular Weight (calculated)

89162.2 Da

IEP (calculated)

5.992

GRAVY (calculated)

-0.390

Length

797 amino acids

Sequence
(BLAST)

001: MNGIEFNGQA FLTGSDQYPN FENGFTFDAH SPLDLNFLDH PFLPPDVNLG VFAQSSSLSP DGDSSDDGDS SDSFLKYVSQ VLMEENLEDK ACMFHDPLAV
101: QAAEKSFYDV LGGQNPTFRS EPPVHVDQVV DSPDDSVSGS SSDYGSYSSR INGTSNLQWS ADAHNSANHQ WVVDPGDRNY KSSFLQNPLP ENYVFGSALG
201: SASPSSVTSS DSFSNIGNGV VDSSPKTVLV PNIFSDSESI LQFKRGVEEA SKFLPKATNL VIDLGNGTLP PQSKVETQRV VVKTEKDERE NSPKWLRRRK
301: NLHRADIELE EGRRSKLSAV DLEEDDDELS EMFDKVLLCS DDKAEPSYYC TGDEDLHNGI CNTWQVYGSA HSNGEKTRIR KQSSGKEVVD FGTLLIQCAQ
401: AVSADDHRTA NELLKQIRQH SSPFGDGYQR LAHCFADGLE ARLAGTGTEI YTVLASKKVS AAAMLKAYEL FLAACPFKKI SAFFANHMIL RLAEKATVIH
501: VIDFGILYGF QWPIFIQRLS ARPGGPPKLR ITGIELPQPG FRPAERVEET GRRLAKYCER FNVPFEYNAI AQKWETIRIE DLKIDRNEAI AVNCLFRSKN
601: LLDETIVVDS PRNAVLGLIR KINPQIFVHS IINGSYNAPF FVTRFREALF HFSAVFDVLD NNAPRENEQR LMFEKEFCGR EVMNVIACEG SQRVERPETY
701: KQWHVRTLKA GFRQLKLDQQ LAKKLKTKMG IGCCRVGRAE FSMLPPAGFP RKSPELDNPG APFSCARALT SYRLFRCKLC PIRVFNLIYI QTMNVID

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.