Factsheet for Zm00001d028603_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92829	Sorghum	cytosol	94.14	94.14
Os03t0690600-03	Rice	cytosol	84.47	84.82
Zm00001d047813_P002	Maize	nucleus	93.32	82.63
TraesCS5D01G152700.1	Wheat	cytosol, plastid	79.97	75.84
TraesCS5A01G139000.1	Wheat	cytosol, plastid	79.97	75.64
TraesCS5B01G138100.1	Wheat	cytosol, plastid	79.84	75.52
HORVU5Hr1G045020.29	Barley	cytosol	80.52	75.1
GSMUA_Achr10P...	Banana	nucleus	41.14	68.33
Solyc04g011630.1.1	Tomato	cytosol	15.8	68.24
GSMUA_Achr10P...	Banana	cytosol	53.27	65.28
GSMUA_Achr7P15080_001	Banana	cytosol	52.59	64.55
CDX68389	Canola	cytosol	6.81	58.82
Zm00001d030744_P001	Maize	cytosol	36.1	53.86
VIT_06s0004g04990.t01	Wine grape	cytosol	32.15	53.39
PGSC0003DMT400049420	Potato	cytosol	47.68	52.71
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	49.86	51.62
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	21.66	50.16
Zm00001d034664_P001	Maize	plastid	38.15	50.09
CDX80265	Canola	endoplasmic reticulum, golgi	21.39	49.53
VIT_13s0019g01810.t01	Wine grape	cytosol	50.0	49.06
KRH65839	Soybean	cytosol, plastid	48.5	48.77
PGSC0003DMT400005480	Potato	cytosol	32.29	48.67
PGSC0003DMT400016258	Potato	cytosol	48.09	48.49
VIT_13s0019g01780.t01	Wine grape	nucleus	39.24	48.0
KRH10240	Soybean	cytosol	39.37	47.69
Zm00001d035671_P001	Maize	cytosol	40.6	47.6
KRH49113	Soybean	cytosol	47.55	47.55
Solyc10g086530.1.1	Tomato	cytosol	49.18	47.44
Zm00001d011070_P001	Maize	cytosol	40.19	47.05
KRG99969	Soybean	cytosol	47.14	46.95
VIT_13s0019g01710.t01	Wine grape	cytosol	46.32	46.77
KRH24780	Soybean	cytosol	41.96	46.67
PGSC0003DMT400022997	Potato	cytosol, plastid	48.37	46.65
Solyc09g010920.1.1	Tomato	cytosol	48.37	46.65
VIT_13s0019g01700.t01	Wine grape	cytosol	47.82	46.18
KRH29773	Soybean	cytosol	38.42	45.93
VIT_13s0019g01790.t01	Wine grape	cytosol	44.82	45.76
CDY71578	Canola	nucleus, plastid	32.43	45.68
PGSC0003DMT400069949	Potato	cytosol	46.05	45.25
KRH23094	Soybean	cytosol	34.06	45.21
CDY07777	Canola	cytosol, nucleus, peroxisome	41.42	45.17
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	41.28	45.02
Solyc05g053090.1.1	Tomato	cytosol	45.5	44.95
CDX79750	Canola	peroxisome	41.14	44.81
KRH29771	Soybean	cytosol	41.01	44.26
VIT_06s0004g04980.t01	Wine grape	nucleus	42.23	44.03
PGSC0003DMT400077972	Potato	cytosol	45.1	44.02
KRH23095	Soybean	cytosol	39.37	43.99
VIT_06s0004g04970.t01	Wine grape	cytosol	39.37	43.92
KRH24773	Soybean	nucleus	40.87	43.67
CDY47877	Canola	nucleus	36.65	43.53
AT2G29065.1	Thale cress	cytosol, nucleus, plastid	37.33	43.49
KRH24778	Soybean	nucleus	40.05	43.49
Solyc06g076280.1.1	Tomato	cytosol	44.28	43.45
AT2G37650.1	Thale cress	cytosol	42.37	43.31
KRH29775	Soybean	nucleus	39.65	43.24
Bra028391.1-P	Field mustard	nucleus	36.51	43.23
CDY39530	Canola	cytosol	36.38	43.13
VIT_06s0004g04950.t01	Wine grape	cytosol	44.01	42.84
Zm00001d041536_P001	Maize	cytosol	41.42	42.82
KRH24775	Soybean	cytosol	39.65	42.79
KRH29774	Soybean	cytosol	36.78	42.79
Zm00001d042907_P001	Maize	cytosol	47.0	42.65
KRH29779	Soybean	cytosol	43.05	42.59
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	37.19	42.26
AT3G46600.1	Thale cress	cytosol	33.38	42.02
Bra015584.1-P	Field mustard	cytosol	24.93	41.97
CDX86475	Canola	nucleus	40.6	41.97
CDY47878	Canola	nucleus	39.37	41.82
Bra028390.1-P	Field mustard	cytosol	39.92	41.5
KRH23089	Soybean	cytosol	36.1	41.15
KRH10243	Soybean	nucleus	37.19	41.05
Zm00001d048601_P001	Maize	cytosol	35.69	40.81
AT2G29060.1	Thale cress	cytosol	38.56	40.78
Solyc01g100200.2.1	Tomato	nucleus	36.92	40.69
CDX77228	Canola	cytosol	37.06	40.48
Solyc06g082530.1.1	Tomato	cytosol	35.83	40.28
Zm00001d035670_P001	Maize	cytosol	39.65	40.08
Bra030688.1-P	Field mustard	nucleus	40.46	39.97
Zm00001d033166_P001	Maize	nucleus	39.78	39.89
Bra035653.1-P	Field mustard	cytosol	39.24	39.89
PGSC0003DMT400078286	Potato	nucleus	36.24	39.88
CDY15616	Canola	nucleus	38.83	39.86
Bra033813.1-P	Field mustard	nucleus	31.47	39.69
CDY31749	Canola	cytosol	39.24	39.67
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	40.05	39.57
KRH10241	Soybean	cytosol, nucleus, peroxisome	36.92	39.39
AT5G59450.1	Thale cress	nucleus	32.7	39.34
VIT_06s0004g04960.t01	Wine grape	nucleus	42.64	39.27
CDX82987	Canola	nucleus	32.02	39.1
CDY06266	Canola	cytosol	33.65	39.08
AT1G07530.1	Thale cress	cytosol	40.74	38.88
Zm00001d003553_P001	Maize	cytosol	32.02	38.72
CDY33040	Canola	nucleus	31.47	38.69
Zm00001d048604_P001	Maize	cytosol	40.33	38.69
KRH23090	Soybean	vacuole	32.7	38.65
Zm00001d048588_P001	Maize	cytosol	32.97	38.17
AT1G07520.3	Thale cress	cytosol	35.83	37.79
Bra031581.1-P	Field mustard	cytosol	34.06	37.43
Zm00001d048600_P001	Maize	nucleus	32.83	37.36
CDY06265	Canola	cytosol	35.01	37.25
Bra031580.1-P	Field mustard	cytosol	34.88	37.1
CDY09912	Canola	cytosol	34.6	36.29
Zm00001d048602_P001	Maize	cytosol	32.83	36.19
Zm00001d007248_P001	Maize	cytosol, endoplasmic reticulum, nucleus	26.57	36.04
Zm00001d048681_P001	Maize	cytosol	27.66	35.68
Zm00001d048682_P001	Maize	nucleus	29.29	34.18
CDX68388	Canola	cytosol	19.07	33.82
Zm00001d007713_P001	Maize	cytosol	27.11	33.22
CDY09911	Canola	nucleus	26.43	33.22
Zm00001d006701_P001	Maize	cytosol	20.03	26.53
Zm00001d021946_P001	Maize	cytosol	19.89	26.16
Zm00001d030500_P001	Maize	nucleus	18.53	25.09
Zm00001d048199_P001	Maize	mitochondrion, nucleus	18.26	25.0
Zm00001d038225_P001	Maize	cytosol	17.71	23.17
Zm00001d006551_P001	Maize	golgi, mitochondrion	17.03	20.26
Zm00001d048603_P001	Maize	cytosol	38.56	19.89
Zm00001d051461_P001	Maize	cytosol	15.4	18.62
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	14.71	17.34
Zm00001d002573_P001	Maize	cytosol	14.58	17.18

Protein Annotations

EntrezGene:100216906	MapMan:15.5.12	UniProt:A0A060D1U6	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	EMBL:KJ727971
ProteinID:ONL96544.1	ProteinID:ONL96545.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF44
InterPro:TF_GRAS	UniParc:UPI0002215AD3	EnsemblPlantsGene:Zm00001d028603	EnsemblPlants:Zm00001d028603_P001	EnsemblPlants:Zm00001d028603_T001	SEG:seg

Description

GRAS-transcription factor 67GRAS transcription factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A060D1U6]

Coordinates

chr1:-:40510526..40516015

Molecular Weight (calculated)

82637.9 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.471

Length

734 amino acids

Sequence
(BLAST)

001: MGLDNTYGDL SGMFYGGLSY DGYTDHSSAS DYFRFADPLP ATVPQMAPEA CSNPSSTVSR ANTETDNPED WEFISDESLD YISRMLMEED IDEKVSMYQA
101: ESAALRAAAK PFYDILGHKF PPSPDRQLIS WSMDSPSESS SSICTQSVAS TVTSSSVGGT VDSNRRYDIG LSEQLEAYRG LCGQASHPLV GTSSDASNAV
201: DVLEDPLITN GQIPEYLFES LPTWDFRRGI EEAQKFLPVN NKLVIGLEAG GIARPQEARK DVSLNAKKAD ALKVKKNRQS EDLDVIEGRN IKQSAFCSDE
301: PDWIEMFDDL LLQTEKKATD LRELMRNEAS KNSQVTQTKG PSGPRPRGRK PTKKDVVDLR TILIHCAQAV AADDRRTANE LLKQIRHHSK PNGDGTQRLA
401: HCFADGLEAR LAGTGSQLYR KLIAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILSM TKHASKVHII DFGIYFGFQW PCLIRRLSKR EGGPPVLRIT
501: GIDVPQPGFR PTERIEETGQ RLAEYAEKLK VPFEYQGIAS KWETIRVEDL KVGKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV
601: NGSYSVPFFI TRFREALFHF SALFDMLETT VPRDDAQRAL IEREMFGREA LNVIACEGSD RVERPETYKQ WQVRNLRAGF VQSPLNQEIV MKAKDKVKDI
701: YHKDFVIDED SGWLLQGWKG RIIYAISTWK PKNN

Best Arabidopsis Sequence Match ( AT2G37650.1 )
(BLAST)

001: MITEPSLTGI SGMVNRNRLS GLPDQPSSHS FTPVTLYDGF NYNLSSDHIN TVVAAPENSV FIREEEEEED PADDFDFSDA VLGYISQMLN EEDMDDKVCM
101: LQESLDLEAA ERSLYEAIGK KYPPSPERNL AFAERNSENL DRVVPGNYTG GDCIGFGNGG IKPLSSGFTL DFRNPQSCSS ILSVPQSNGL ITIYGDGIDE
201: SSKNNRENHQ SVWLFRREIE EANRFNPEEN ELIVNFREEN CVSKARKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGGES MKEFNALRDV
301: LKKGVEKKKA SDAQGGKRRA RGRGRGRGRG GGGGQNGKKE VVDLRSLLIH CAQAVAADDR RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG
401: SQIYKGIVSK PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSQ RVHVIDFGIL YGFQWPTLIH RFSMYGSPKV RITGIEFPQP GFRPAQRVEE
501: TGQRLAAYAK LFGVPFEYKA IAKKWDAIQL EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL
601: FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET YKQWHVRAMR SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG
701: WKGRTVMALS VWKPESKA

Arabidopsis Description

SCL9Scarecrow-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80933]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.