Factsheet for VIT_06s0004g04980.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04990.t01	Wine grape	cytosol	41.76	66.52
VIT_06s0004g04970.t01	Wine grape	cytosol	61.08	65.35
CDX68389	Canola	cytosol	6.96	57.65
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	25.0	55.52
CDX80265	Canola	endoplasmic reticulum, golgi	24.72	54.89
GSMUA_Achr10P...	Banana	nucleus	30.82	49.09
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	48.58	48.24
VIT_13s0019g01780.t01	Wine grape	nucleus	41.05	48.17
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	44.18	48.14
Zm00001d034664_P001	Maize	plastid	38.07	47.94
KRH29771	Soybean	cytosol	46.02	47.65
KRH24773	Soybean	nucleus	46.45	47.6
Solyc01g100200.2.1	Tomato	nucleus	44.74	47.3
KRH10240	Soybean	cytosol	40.62	47.19
TraesCS1B01G037500.1	Wheat	cytosol	27.41	46.73
GSMUA_Achr10P...	Banana	cytosol	39.63	46.58
AT3G46600.1	Thale cress	cytosol	38.35	46.31
VIT_13s0019g01810.t01	Wine grape	cytosol	49.15	46.26
Bra033813.1-P	Field mustard	nucleus	37.78	45.7
KRH23095	Soybean	cytosol	42.61	45.66
Solyc06g082530.1.1	Tomato	cytosol	42.05	45.33
VIT_13s0019g01710.t01	Wine grape	cytosol	46.31	44.84
PGSC0003DMT400078286	Potato	nucleus	42.47	44.83
CDX82987	Canola	nucleus	38.07	44.59
GSMUA_Achr8P02550_001	Banana	nucleus	24.72	44.39
HORVU3Hr1G012520.1	Barley	cytosol	28.69	44.3
VIT_13s0019g01790.t01	Wine grape	cytosol	45.17	44.23
CDY33040	Canola	nucleus	37.5	44.22
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	39.77	44.03
GSMUA_Achr7P15080_001	Banana	cytosol	37.36	43.98
VIT_13s0019g01700.t01	Wine grape	cytosol	47.44	43.95
KRH23094	Soybean	cytosol	34.52	43.94
AT5G59450.1	Thale cress	nucleus	38.07	43.93
GSMUA_Achr6P34090_001	Banana	nucleus	38.07	43.79
KXG37250	Sorghum	cytosol	40.34	43.63
Os03t0690600-03	Rice	cytosol	44.03	42.41
HORVU5Hr1G113620.1	Barley	cytosol, nucleus, peroxisome	38.78	42.39
TraesCS5D01G494900.1	Wheat	cytosol	39.49	42.31
Zm00001d028603_P001	Maize	cytosol	44.03	42.23
VIT_06s0004g04950.t01	Wine grape	cytosol	45.17	42.18
TraesCS5B01G494500.1	Wheat	cytosol	39.35	42.16
TraesCS5A01G481300.1	Wheat	cytosol	38.92	41.83
OQU92829	Sorghum	cytosol	43.61	41.83
KXG38103	Sorghum	cytosol	37.07	41.69
CDX68388	Canola	cytosol	23.86	40.58
KXG21079	Sorghum	cytosol	35.8	40.45
Zm00001d011070_P001	Maize	cytosol	35.8	40.19
Zm00001d035671_P001	Maize	cytosol	35.65	40.1
KXG21080	Sorghum	cytosol	35.51	39.94
TraesCS5D01G152700.1	Wheat	cytosol, plastid	42.47	38.63
TraesCS5A01G139000.1	Wheat	cytosol, plastid	42.47	38.53
TraesCS5B01G138100.1	Wheat	cytosol, plastid	42.33	38.4
HORVU5Hr1G045020.29	Barley	cytosol	42.76	38.25
HORVU3Hr1G012550.6	Barley	cytosol	31.82	37.58
GSMUA_AchrUn_...	Banana	cytosol	34.66	37.03
Zm00001d047813_P002	Maize	nucleus	43.47	36.91
VIT_06s0004g04960.t01	Wine grape	nucleus	41.76	36.89
TraesCS1B01G037300.1	Wheat	cytosol	36.08	36.08
OQU91407	Sorghum	nucleus	34.66	35.57
TraesCS3D01G067900.1	Wheat	nucleus	34.38	35.07
TraesCS1D01G030900.1	Wheat	cytosol	35.51	35.06
TraesCS1D01G031000.1	Wheat	cytosol	35.8	34.76
Zm00001d033166_P001	Maize	nucleus	35.37	34.02
TraesCS1A01G030200.1	Wheat	cytosol	34.8	33.98
HORVU1Hr1G004440.1	Barley	cytosol	34.66	33.94
TraesCS1A01G030300.1	Wheat	cytosol	33.95	33.85
TraesCS1D01G030800.1	Wheat	cytosol	33.66	33.81
TraesCS3A01G068000.1	Wheat	nucleus	34.38	33.8
TraesCS3B01G081100.1	Wheat	nucleus	34.23	33.71
EER91260	Sorghum	nucleus	34.23	33.43
EES18882	Sorghum	cytosol	34.8	33.42
OQU91406	Sorghum	nucleus	35.51	33.42
Zm00001d035670_P001	Maize	cytosol	34.38	33.33
KXG38064	Sorghum	nucleus	33.95	33.19
TraesCS3D01G067700.1	Wheat	cytosol	33.66	32.83
TraesCS1B01G037400.1	Wheat	cytosol	33.52	32.64
TraesCS1D01G031200.1	Wheat	cytosol	33.52	32.37
TraesCS3B01G080900.1	Wheat	nucleus	33.1	32.32
TraesCS3A01G067900.1	Wheat	cytosol	32.81	31.99
EES18880	Sorghum	cytosol	33.66	31.98
TraesCS3B01G081000.1	Wheat	cytosol	32.95	31.87
TraesCS3D01G067800.1	Wheat	nucleus	30.4	31.66
TraesCS1B01G037200.1	Wheat	nucleus	32.53	30.25
VIT_00s0463g00020.t01	Wine grape	nucleus	20.45	26.42
VIT_19s0090g01740.t01	Wine grape	cytosol	20.17	26.05
VIT_12s0057g00560.t01	Wine grape	cytosol	19.74	25.5
VIT_19s0014g04940.t01	Wine grape	cytosol	20.31	24.53
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	19.18	23.89
VIT_04s0044g01370.t01	Wine grape	nucleus	18.89	23.42
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	17.05	20.37

Protein Annotations

EntrezGene:100267399	wikigene:100267399	MapMan:15.5.12	ProteinID:CCB43558	ProteinID:CCB43558.1	UniProt:F6GUZ9
EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100267399	wikigene:LOC100267399	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF56	TIGR:TC55021	InterPro:TF_GRAS	UniParc:UPI00015C745A
ArrayExpress:VIT_06s0004g04980	EnsemblPlantsGene:VIT_06s0004g04980	EnsemblPlants:VIT_06s0004g04980.t01	unigene:Vvi.13949	RefSeq:XP_002280765	RefSeq:XP_002280765.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:5938401..5940929

Molecular Weight (calculated)

79279.9 Da

IEP (calculated)

5.189

GRAVY (calculated)

-0.477

Length

704 amino acids

Sequence
(BLAST)

001: MDTLLGEFSG SMPEFKFDHD SVSVSSYSDQ NLVERSNKLS QGTMDPPFLP TNHQPCNSAT SGATPEGPPT EEGDFSVAMY KYIGDILMEE DLEDKNCMLQ
101: DSVALLAAEK SFYDVLGEPF LPQPNSPQSI GRNIESPDDN PVTSCSSSSS NSDATANSFV ESDWAGQFEA SYLQTPLVNQ VWQSNVMSNS QFIDSPVSAP
201: LKGGLFRESQ SVERVIYDLE NNIAIPFEAN GKALETEKGG IRGKKKQQRG DGYDSEERST KQSALYAEEC EPSEVFDSAL LCEDLNVSGI CIVEEEARKK
301: LQKNGESKAN GKAGRRKKQG NKGEVVDLRA LLTQCAQALA GSNLRSANDL LKMIRQHSSP CGDGVQRLAH FFANSLEARL SGTGLEMSKA LVRKRTPAGD
401: IIKAYRLYVT VCPLRRMSHK FANRTMAKLA ERETRLHIID FGILYGFQWP CLIQLLSSRP GGPPKLRITG IDHPQPGFRP EERVEETGRR LANYCDRFNV
501: PFEYKAIAQK WDTIRLEDLK IEKDEVVVVN CLYRLKNLLD ETVVANSPRD AVLKLIREIN PAVFIHGVVN GTFNAPFFVT RFRESLFHYD TLFDMFEATV
601: PREDQERMLF EREIFGMDIM NIIACEGSER FERPETYKQW QIRNVRAGLR QLPLDQEIVT NVRSTVKLDY HKDFVVDEDG GWMLQGWKGR IIYAISCWKP
701: HSEL

Best Arabidopsis Sequence Match ( AT2G29060.1 )
(BLAST)

001: MGSYSAGFPG SLDWFDFPGL GNGSYLNDQP LLDIGSVPPP LDPYPQQNLA SADADFSDSV LKYISQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK
101: YPVDDSDQPL TTTTSLAQLV SSPGGSSYAS STTTTSSDSQ WSFDCLENNR PSSWLQTPIP SNFIFQSTST RASSGNAVFG SSFSGDLVSN MFNDTDLALQ
201: FKKGMEEASK FLPKSSQLVI DNSVPNRLTG KKSHWREEEH LTEERSKKQS AIYVDETDEL TDMFDNILIF GEAKEQPVCI LNESFPKEPA KASTFSKSPK
301: GEKPEASGNS YTKETPDLRT MLVSCAQAVS INDRRTADEL LSRIRQHSSS YGDGTERLAH YFANSLEARL AGIGTQVYTA LSSKKTSTSD MLKAYQTYIS
401: VCPFKKIAII FANHSIMRLA SSANAKTIHI IDFGISDGFQ WPSLIHRLAW RRGSSCKLRI TGIELPQRGF RPAEGVIETG RRLAKYCQKF NIPFEYNAIA
501: QKWESIKLED LKLKEGEFVA VNSLFRFRNL LDETVAVHSP RDTVLKLIRK IKPDVFIPGI LSGSYNAPFF VTRFREVLFH YSSLFDMCDT NLTREDPMRV
601: MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG FRQIPLEKEL VQKLKLMVES GYKPKEFDVD QDCHWLLQGW KGRIVYGSSI WVPL

Arabidopsis Description

SCL33Scarecrow-like protein 33 [Source:UniProtKB/Swiss-Prot;Acc:P0C883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.