Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002564.1-P | Field mustard | endoplasmic reticulum, golgi | 46.07 | 88.64 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 45.25 | 87.07 |
| CDY33040 | Canola | nucleus | 79.67 | 81.41 |
| AT3G46600.1 | Thale cress | cytosol | 65.41 | 68.44 |
| VIT_06s0004g04990.t01 | Wine grape | cytosol | 32.95 | 45.48 |
| PGSC0003DMT400063769 | Potato | cytosol, nucleus, peroxisome | 45.08 | 42.57 |
| Solyc01g100200.2.1 | Tomato | nucleus | 46.07 | 42.19 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 30.98 | 41.45 |
| KRH10240 | Soybean | cytosol | 40.82 | 41.09 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 27.54 | 40.68 |
| KRH23095 | Soybean | cytosol | 42.13 | 39.12 |
| Zm00001d034664_P001 | Maize | plastid | 35.41 | 38.64 |
| VIT_06s0004g04980.t01 | Wine grape | nucleus | 43.93 | 38.07 |
| KRH24773 | Soybean | nucleus | 42.13 | 37.41 |
| KRH29771 | Soybean | cytosol | 41.64 | 37.35 |
| VIT_06s0004g04970.t01 | Wine grape | cytosol | 40.16 | 37.23 |
| KRH23094 | Soybean | cytosol | 33.61 | 37.07 |
| GSMUA_Achr10P... | Banana | nucleus | 26.72 | 36.88 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 38.36 | 36.79 |
| KXG38103 | Sorghum | cytosol | 37.21 | 36.26 |
| Solyc06g082530.1.1 | Tomato | cytosol | 38.69 | 36.14 |
| PGSC0003DMT400078286 | Potato | nucleus | 39.51 | 36.13 |
| Zm00001d035671_P001 | Maize | cytosol | 37.05 | 36.1 |
| KXG21080 | Sorghum | cytosol | 36.72 | 35.78 |
| GSMUA_Achr10P... | Banana | cytosol | 35.08 | 35.73 |
| KXG37250 | Sorghum | cytosol | 38.03 | 35.64 |
| KXG21079 | Sorghum | cytosol | 36.39 | 35.63 |
| AT2G29065.1 | Thale cress | cytosol, nucleus, plastid | 36.72 | 35.56 |
| Zm00001d011070_P001 | Maize | cytosol | 36.39 | 35.41 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 37.38 | 35.4 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 37.87 | 35.16 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 37.7 | 35.01 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 37.54 | 34.96 |
| AT2G29060.1 | Thale cress | cytosol | 38.52 | 33.86 |
| AT2G37650.1 | Thale cress | cytosol | 39.34 | 33.43 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 33.44 | 33.33 |
| OQU92829 | Sorghum | cytosol | 40.0 | 33.24 |
| Os03t0690600-03 | Rice | cytosol | 39.51 | 32.97 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 32.3 | 32.94 |
| Zm00001d028603_P001 | Maize | cytosol | 39.34 | 32.7 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 31.48 | 32.21 |
| AT1G07520.3 | Thale cress | cytosol | 36.72 | 32.18 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 20.66 | 32.14 |
| AT1G07530.1 | Thale cress | cytosol | 39.18 | 31.08 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 34.59 | 29.97 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 37.54 | 29.59 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 37.54 | 29.51 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 37.54 | 29.51 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 37.87 | 29.35 |
| Zm00001d035670_P001 | Maize | cytosol | 34.92 | 29.34 |
| OQU91407 | Sorghum | nucleus | 32.95 | 29.3 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 33.11 | 29.28 |
| Zm00001d047813_P002 | Maize | nucleus | 39.67 | 29.19 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 34.1 | 29.17 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 32.13 | 28.99 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 34.1 | 28.93 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 34.1 | 28.85 |
| GSMUA_AchrUn_... | Banana | cytosol | 31.15 | 28.83 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 33.11 | 28.82 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 33.93 | 28.67 |
| EES18882 | Sorghum | cytosol | 34.26 | 28.51 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 33.77 | 28.41 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 33.44 | 28.25 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 33.11 | 28.21 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 32.62 | 28.19 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 33.61 | 28.16 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 32.95 | 28.11 |
| AT2G04890.1 | Thale cress | cytosol | 18.85 | 27.84 |
| KXG38064 | Sorghum | nucleus | 32.79 | 27.78 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 32.79 | 27.74 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 33.11 | 27.71 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 32.79 | 27.66 |
| Zm00001d033166_P001 | Maize | nucleus | 32.95 | 27.46 |
| EES18880 | Sorghum | cytosol | 33.28 | 27.4 |
| EER91260 | Sorghum | nucleus | 32.3 | 27.32 |
| OQU91406 | Sorghum | nucleus | 32.79 | 26.74 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 31.48 | 25.36 |
| AT5G48150.4 | Thale cress | cytosol | 19.84 | 24.69 |
| AT4G17230.1 | Thale cress | cytosol | 21.31 | 24.57 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 20.49 | 20.8 |
| AT1G21450.1 | Thale cress | nucleus | 20.0 | 20.57 |
| AT5G52510.1 | Thale cress | nucleus | 16.39 | 15.62 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:836064 | UniProt:A0A178UGG6 | ProteinID:AED97191.1 | EMBL:AF036307 | ArrayExpress:AT5G59450 |
| EnsemblPlantsGene:AT5G59450 | RefSeq:AT5G59450 | TAIR:AT5G59450 | RefSeq:AT5G59450-TAIR-G | EnsemblPlants:AT5G59450.1 | TAIR:AT5G59450.1 |
| EMBL:AY035001 | EMBL:AY062942 | Unigene:At.29225 | ProteinID:BAA97480.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0010200 | GO:GO:0043565 | InterPro:IPR005202 |
| RefSeq:NP_200753.1 | ProteinID:OAO92222.1 | PFAM:PF03514 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF56 |
| UniProt:Q9LTI5 | InterPro:TF_GRAS | UniParc:UPI00000A5434 | SEG:seg | : | : |
Description
SCL11Scarecrow-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTI5]
Coordinates
chr5:+:23974458..23976791
Molecular Weight (calculated)
69772.2 Da
IEP (calculated)
6.029
GRAVY (calculated)
-0.566
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MDALLQVSVD GFRFENGSGS CCKPRNNLES GNNLFPDFHE SQNQSSPNDS PPTVCLDNSP VLKYINDMLM DEEDFVGISR DDLALQAAER SFYEIIQQQS
101: PESDQNTSSS SDQNSGDQDF CFPSTTTDSS ALVSSGESQR KYRHRNDEED DLENNRRNKQ PAIFVSEMEE LAVKLEHVLL VCKTNQEEEE ERTVITKQST
201: PNRAGRAKGS SNKSKTHKTN TVDLRSLLTQ CAQAVASFDQ RRATDKLKEI RAHSSSNGDG TQRLAFYFAE ALEARITGNI SPPVSNPFPS STTSMVDILK
301: AYKLFVHTCP IYVTDYFAAN KSIYELAMKA TKLHIVDFGV LYGFQWPCLL RALSKRPGGP PMLRVTGIEL PQAGFRPSDR VEETGRRLKR FCDQFNVPFE
401: FNFIAKKWET ITLDELMINP GETTVVNCIH RLQYTPDETV SLDSPRDTVL KLFRDINPDL FVFAEINGMY NSPFFMTRFR EALFHYSSLF DMFDTTIHAE
501: DEYKNRSLLE RELLVRDAMS VISCEGAERF ARPETYKQWR VRILRAGFKP ATISKQIMKE AKEIVRKRYH RDFVIDSDNN WMLQGWKGRV IYAFSCWKPA
601: EKFTNNNLNI
101: PESDQNTSSS SDQNSGDQDF CFPSTTTDSS ALVSSGESQR KYRHRNDEED DLENNRRNKQ PAIFVSEMEE LAVKLEHVLL VCKTNQEEEE ERTVITKQST
201: PNRAGRAKGS SNKSKTHKTN TVDLRSLLTQ CAQAVASFDQ RRATDKLKEI RAHSSSNGDG TQRLAFYFAE ALEARITGNI SPPVSNPFPS STTSMVDILK
301: AYKLFVHTCP IYVTDYFAAN KSIYELAMKA TKLHIVDFGV LYGFQWPCLL RALSKRPGGP PMLRVTGIEL PQAGFRPSDR VEETGRRLKR FCDQFNVPFE
401: FNFIAKKWET ITLDELMINP GETTVVNCIH RLQYTPDETV SLDSPRDTVL KLFRDINPDL FVFAEINGMY NSPFFMTRFR EALFHYSSLF DMFDTTIHAE
501: DEYKNRSLLE RELLVRDAMS VISCEGAERF ARPETYKQWR VRILRAGFKP ATISKQIMKE AKEIVRKRYH RDFVIDSDNN WMLQGWKGRV IYAFSCWKPA
601: EKFTNNNLNI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.