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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g100200.2.1 Tomato nucleus 94.43 91.59
CDX68389 Canola cytosol 8.2 62.35
Bra002564.1-P Field mustard endoplasmic reticulum, golgi 28.33 57.73
CDX80265 Canola endoplasmic reticulum, golgi 28.17 57.41
VIT_06s0004g04990.t01 Wine grape cytosol 38.24 55.88
PGSC0003DMT400005480 Potato cytosol 35.91 47.64
AT3G46600.1 Thale cress cytosol 41.95 46.48
Bra033813.1-P Field mustard nucleus 41.8 46.39
CDX82987 Canola nucleus 42.26 45.42
CDY33040 Canola nucleus 41.95 45.39
VIT_06s0004g04970.t01 Wine grape cytosol 46.13 45.29
AT5G59450.1 Thale cress nucleus 42.57 45.08
TraesCS1B01G037500.1 Wheat cytosol 28.64 44.79
PGSC0003DMT400078286 Potato nucleus 46.13 44.68
KRH10240 Soybean cytosol 41.64 44.39
VIT_06s0004g04980.t01 Wine grape nucleus 48.14 44.18
HORVU3Hr1G012520.1 Barley cytosol 31.11 44.08
KRH29771 Soybean cytosol 45.82 43.53
Zm00001d034664_P001 Maize plastid 37.31 43.11
KRH24773 Soybean nucleus 45.36 42.65
KRH23094 Soybean cytosol 36.38 42.5
KRH23095 Soybean cytosol 42.72 42.01
CDX68388 Canola cytosol 26.63 41.55
HORVU5Hr1G113620.1 Barley cytosol, nucleus, peroxisome 40.87 40.99
GSMUA_Achr10P... Banana cytosol 37.93 40.9
GSMUA_Achr10P... Banana nucleus 27.86 40.72
Os04t0590400-01 Rice cytosol, nucleus, peroxisome 40.09 40.72
PGSC0003DMT400049420 Potato cytosol 41.64 40.51
TraesCS5A01G481300.1 Wheat cytosol 40.56 40.0
TraesCS5B01G494500.1 Wheat cytosol 40.56 39.88
TraesCS5D01G494900.1 Wheat cytosol 40.56 39.88
KXG37250 Sorghum cytosol 39.94 39.63
PGSC0003DMT400016258 Potato cytosol 44.43 39.42
PGSC0003DMT400077972 Potato cytosol 43.96 37.77
GSMUA_Achr7P15080_001 Banana cytosol 34.83 37.63
GSMUA_Achr6P34090_001 Banana nucleus 35.6 37.58
Zm00001d011070_P001 Maize cytosol 36.22 37.32
KXG38103 Sorghum cytosol 36.07 37.22
Zm00001d028603_P001 Maize cytosol 42.26 37.19
KXG21080 Sorghum cytosol 35.91 37.06
PGSC0003DMT400022997 Potato cytosol, plastid 43.5 36.93
KXG21079 Sorghum cytosol 35.6 36.92
Os03t0690600-03 Rice cytosol 41.64 36.8
OQU92829 Sorghum cytosol 41.8 36.78
PGSC0003DMT400069949 Potato cytosol 41.8 36.14
Zm00001d035671_P001 Maize cytosol 34.98 36.1
HORVU3Hr1G012550.6 Barley cytosol 32.97 35.74
GSMUA_Achr8P02550_001 Banana nucleus 21.67 35.71
TraesCS5A01G139000.1 Wheat cytosol, plastid 40.09 33.38
TraesCS5D01G152700.1 Wheat cytosol, plastid 39.94 33.33
GSMUA_AchrUn_... Banana cytosol 33.9 33.23
TraesCS5B01G138100.1 Wheat cytosol, plastid 39.78 33.12
TraesCS1B01G037300.1 Wheat cytosol 36.07 33.1
HORVU5Hr1G045020.29 Barley cytosol 40.09 32.91
Zm00001d047813_P002 Maize nucleus 42.11 32.81
TraesCS1D01G030800.1 Wheat cytosol 35.14 32.38
TraesCS3D01G067900.1 Wheat nucleus 34.52 32.32
TraesCS1D01G030900.1 Wheat cytosol 35.14 31.84
OQU91407 Sorghum nucleus 33.75 31.78
TraesCS1A01G030300.1 Wheat cytosol 34.52 31.59
TraesCS3A01G068000.1 Wheat nucleus 34.98 31.56
TraesCS3D01G067700.1 Wheat cytosol 35.14 31.44
TraesCS3A01G067900.1 Wheat cytosol 35.14 31.44
TraesCS1D01G031000.1 Wheat cytosol 35.14 31.31
TraesCS3B01G080900.1 Wheat nucleus 34.67 31.07
TraesCS3B01G081100.1 Wheat nucleus 34.37 31.05
TraesCS1B01G037400.1 Wheat cytosol 34.67 30.98
TraesCS1A01G030200.1 Wheat cytosol 34.52 30.93
Zm00001d035670_P001 Maize cytosol 34.52 30.72
EES18882 Sorghum cytosol 34.67 30.56
HORVU1Hr1G004440.1 Barley cytosol 33.9 30.46
EER91260 Sorghum nucleus 33.9 30.37
TraesCS1D01G031200.1 Wheat cytosol 34.21 30.32
TraesCS3B01G081000.1 Wheat cytosol 34.06 30.22
Zm00001d033166_P001 Maize nucleus 34.21 30.19
TraesCS3D01G067800.1 Wheat nucleus 31.11 29.73
KXG38064 Sorghum nucleus 32.97 29.58
EES18880 Sorghum cytosol 33.59 29.28
OQU91406 Sorghum nucleus 33.59 29.01
TraesCS1B01G037200.1 Wheat nucleus 32.35 27.61
PGSC0003DMT400034763 Potato cytosol 21.83 26.4
PGSC0003DMT400060553 Potato cytosol 21.05 25.95
PGSC0003DMT400015696 Potato cytosol 21.21 25.61
PGSC0003DMT400057111 Potato nucleus 20.9 25.14
PGSC0003DMT400021748 Potato nucleus 21.05 24.33
PGSC0003DMT400056120 Potato cytosol 20.28 23.43
PGSC0003DMT400049492 Potato cytosol 20.74 23.02
PGSC0003DMT400063944 Potato cytosol, mitochondrion 18.27 21.11
PGSC0003DMT400076932 Potato nucleus 16.87 17.99
PGSC0003DMT400026240 Potato nucleus, plastid 17.34 17.13
Protein Annotations
EntrezGene:102595190MapMan:15.5.12GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202UniProt:M1CB76PFAM:PF03514
EnsemblPlantsGene:PGSC0003DMG400024781PGSC:PGSC0003DMG400024781EnsemblPlants:PGSC0003DMT400063769PFscan:PS50985PANTHER:PTHR31636PANTHER:PTHR31636:SF56
InterPro:TF_GRASUniParc:UPI000294A35DRefSeq:XP_006344724.1:::
Description
GRAS4 [Source:PGSC_GENE;Acc:PGSC0003DMG400024781]
Coordinates
chr1:-:77899363..77901888
Molecular Weight (calculated)
73110.6 Da
IEP (calculated)
6.978
GRAVY (calculated)
-0.487
Length
646 amino acids
Sequence
(BLAST)
001: MDPRKDVVQN GVNNHPSFVQ DYLSNHVVGE GDSSSPKEEG ERDYSDAMYK FLSQMLMEED DLENKPCMFH DCMALQAKEK YLSDVLHGSE NNYSPQSVII
101: NPHESSSFLS NYSPDSIESP QWDLNFESPV SVSTLSNHDS FFTSFGNGHF EGGAVNVFRS GSSSNSPTGL REKKNRHRGD VAADLAADQQ RSNKQMATFV
201: HDESEPLEMY DNVLLCLNNP YVEHHSATSV TSYSPPNEAK KASKVGRPRG GRKHSSIVKK EMVDLRALLT QCAQAMASYD SRTANELLMR IREHSTPHGD
301: GTERLAHYLA NALEARLSGT GTALYTAYAP SRISAANILK AYKAFITACP FKLLSNMFAN KYIRKVIAGA PKIHIIDFGI LYGFQWPCLI QGLSMRAGGP
401: PELRITGIDL PQSGFKPAGR VEETGRRLEK YCKRFNVPFV FKAIAKKWES ITLEDLEIQR DEVLVVNSLY RLGNIPDETV VPNSPRDAVL NLIRRIRPDL
501: FIHGALNGTF NTPFFVTRFR EALFHFSSLF DMFEATMPHE DEDRKLFEEE VYARDAMNVI ACEGTERVER PETYKQWQLR CVRAGFKQVP LDQEIVKIVR
601: NKVRSEYHRD FSVDEDGHWM LQGWKGRVIY ALSCWKPTKQ SVKLGV
Best Arabidopsis Sequence Match ( AT5G59450.1 )
(BLAST)
001: MDALLQVSVD GFRFENGSGS CCKPRNNLES GNNLFPDFHE SQNQSSPNDS PPTVCLDNSP VLKYINDMLM DEEDFVGISR DDLALQAAER SFYEIIQQQS
101: PESDQNTSSS SDQNSGDQDF CFPSTTTDSS ALVSSGESQR KYRHRNDEED DLENNRRNKQ PAIFVSEMEE LAVKLEHVLL VCKTNQEEEE ERTVITKQST
201: PNRAGRAKGS SNKSKTHKTN TVDLRSLLTQ CAQAVASFDQ RRATDKLKEI RAHSSSNGDG TQRLAFYFAE ALEARITGNI SPPVSNPFPS STTSMVDILK
301: AYKLFVHTCP IYVTDYFAAN KSIYELAMKA TKLHIVDFGV LYGFQWPCLL RALSKRPGGP PMLRVTGIEL PQAGFRPSDR VEETGRRLKR FCDQFNVPFE
401: FNFIAKKWET ITLDELMINP GETTVVNCIH RLQYTPDETV SLDSPRDTVL KLFRDINPDL FVFAEINGMY NSPFFMTRFR EALFHYSSLF DMFDTTIHAE
501: DEYKNRSLLE RELLVRDAMS VISCEGAERF ARPETYKQWR VRILRAGFKP ATISKQIMKE AKEIVRKRYH RDFVIDSDNN WMLQGWKGRV IYAFSCWKPA
601: EKFTNNNLNI
Arabidopsis Description
SCL11Scarecrow-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTI5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.