Factsheet for PGSC0003DMT400057111

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065270.1.1	Tomato	nucleus	96.65	96.47
Bra026077.1-P	Field mustard	cytosol	38.55	70.41
GSMUA_Achr4P07010_001	Banana	cytosol	42.27	69.21
VIT_19s0090g01740.t01	Wine grape	cytosol	62.94	62.02
PGSC0003DMT400015696	Potato	cytosol	61.27	61.5
CDY71156	Canola	cytosol, plastid	44.51	61.28
TraesCS5A01G414000.1	Wheat	cytosol	47.67	60.09
CDY07309	Canola	cytosol	26.82	60.0
GSMUA_Achr4P11050_001	Banana	nucleus	43.76	59.19
CDY22807	Canola	nucleus	46.18	59.05
CDY37124	Canola	nucleus	46.18	59.05
GSMUA_AchrUn_...	Banana	nucleus	45.81	57.48
KRH73868	Soybean	cytosol	57.17	56.33
TraesCS5A01G409800.1	Wheat	nucleus, plastid	52.51	56.29
Bra018860.1-P	Field mustard	nucleus	54.93	56.19
Os07t0583600-01	Rice	plasma membrane	56.61	55.88
KRH14274	Soybean	cytosol	56.61	55.78
KRG98562	Soybean	nucleus	55.87	55.05
KRH46306	Soybean	cytosol	54.75	53.95
EER97449	Sorghum	cytosol	54.93	53.93
TraesCS2B01G217500.1	Wheat	cytosol	54.75	53.07
Zm00001d030500_P001	Maize	nucleus	53.26	52.77
HORVU2Hr1G036280.1	Barley	cytosol	54.38	52.42
Zm00001d006701_P001	Maize	cytosol	54.0	52.35
TraesCS2D01G198200.1	Wheat	cytosol	54.0	52.25
Os03t0193000-01	Rice	plastid	51.96	52.15
TraesCS5D01G419400.2	Wheat	cytosol	53.26	52.0
TraesCS2A01G189600.1	Wheat	cytosol	53.63	51.99
PGSC0003DMT400034763	Potato	cytosol	51.4	51.69
EER95348	Sorghum	cytosol	51.58	51.68
Zm00001d021946_P001	Maize	cytosol	53.63	51.61
TraesCS4B01G266700.1	Wheat	cytosol	51.02	51.02
TraesCS4D01G266400.1	Wheat	cytosol	50.84	50.93
HORVU4Hr1G071670.1	Barley	cytosol	50.84	50.93
Zm00001d048199_P001	Maize	mitochondrion, nucleus	50.65	50.75
PGSC0003DMT400060553	Potato	cytosol	48.79	50.0
TraesCS4A01G039000.1	Wheat	nucleus	45.44	49.9
AT1G50600.2	Thale cress	golgi, mitochondrion	55.31	49.42
KRH38269	Soybean	cytosol	31.28	47.59
PGSC0003DMT400021748	Potato	nucleus	49.35	47.41
PGSC0003DMT400056120	Potato	cytosol	47.67	45.8
HORVU5Hr1G099160.1	Barley	plastid	52.89	45.08
PGSC0003DMT400049492	Potato	cytosol	48.04	44.33
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	39.29	37.75
PGSC0003DMT400005480	Potato	cytosol	25.51	28.13
PGSC0003DMT400076932	Potato	nucleus	28.86	25.58
PGSC0003DMT400026240	Potato	nucleus, plastid	28.68	23.55
PGSC0003DMT400049420	Potato	cytosol	26.07	21.08
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	25.14	20.9
PGSC0003DMT400016258	Potato	cytosol	28.12	20.74
PGSC0003DMT400069949	Potato	cytosol	27.19	19.54
PGSC0003DMT400022997	Potato	cytosol, plastid	27.0	19.05
PGSC0003DMT400077972	Potato	cytosol	26.44	18.88
PGSC0003DMT400078286	Potato	nucleus	23.28	18.74

Protein Annotations

EntrezGene:102591653	MapMan:15.5.12	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	UniProt:M1C0F3	PFAM:PF03514	EnsemblPlantsGene:PGSC0003DMG400022187
PGSC:PGSC0003DMG400022187	EnsemblPlants:PGSC0003DMT400057111	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF57	InterPro:TF_GRAS
UniParc:UPI0002967E9D	RefSeq:XP_006346161.1	:	:	:	:

Description

GRAS7 [Source:PGSC_GENE;Acc:PGSC0003DMG400022187]

Coordinates

chr7:-:55324106..55327585

Molecular Weight (calculated)

60140.2 Da

IEP (calculated)

5.068

GRAVY (calculated)

-0.280

Length

537 amino acids

Sequence
(BLAST)

001: MRPSQNPEDI NEFNRFYNQP IEYQESYFLP SINNPNNNQS YYADVSALKP DQHYYVESST GNSSELVSDS PPIVNFNPMM QQGSDSCRSD MHHSPDDTFQ
101: SSGNSSCYTS DVTDLKHKLR ELETAMLGPD SESMESYNTI PAAAANQVSS ESDKLVGMME MMPSGDVKEV LIACAKAIAE NNLITAEWLM SELRTVVSVC
201: GSPLQRLGAY MLEGLVARLA SSGSSIYKAL RCKEPTSVEL FSYMHLLYEI CPYFKFGYLS ANGAIVDAMK DENSIHIIDF QIAQGSQWIT LIHALAARPG
301: GPPRIRITGI DDSTSAYARG GGIEIVGRRL SSIAASCNVP FEFHPVSASC PDIEIEHLKV LPGEPLAVNF ALVLHHMPDE SVGTQNHRDR LLRMVKSLSP
401: KIVTLVEQES NTNTAQFFPR FLETLNYYLS VFESIDVALP RDHKERINVE QHCLAREIVN ILACEGTERV ERHELLERWR SRFAMAGFKP YPLSSSVNAT
501: IKTLLENYYQ SYTLNERNGV LYLGWMNRDL VASCAWK

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.