Factsheet for Bra026077.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71156	Canola	cytosol, plastid	96.6	72.82
Bra015156.1-P	Field mustard	cytosol	62.93	58.18
CDY07309	Canola	cytosol	46.94	57.5
Bra018860.1-P	Field mustard	nucleus	99.32	55.62
AT1G50600.2	Thale cress	golgi, mitochondrion	98.64	48.25
Bra020715.1-P	Field mustard	cytosol, plastid	71.43	42.25
TraesCS5A01G414000.1	Wheat	cytosol	61.22	42.25
Bra036185.1-P	Field mustard	cytosol	70.75	42.02
GSMUA_Achr4P07010_001	Banana	cytosol	46.26	41.46
VIT_19s0090g01740.t01	Wine grape	cytosol	72.11	38.9
PGSC0003DMT400057111	Potato	nucleus	70.41	38.55
Solyc07g065270.1.1	Tomato	nucleus	70.41	38.48
KRH73868	Soybean	cytosol	70.75	38.17
KRH46306	Soybean	cytosol	69.73	37.61
Os07t0583600-01	Rice	plasma membrane	69.39	37.5
KRH14274	Soybean	cytosol	69.39	37.43
TraesCS5A01G409800.1	Wheat	nucleus, plastid	63.61	37.33
KRG98562	Soybean	nucleus	69.05	37.25
TraesCS2B01G217500.1	Wheat	cytosol	69.39	36.82
Os03t0193000-01	Rice	plastid	66.33	36.45
TraesCS2D01G198200.1	Wheat	cytosol	68.71	36.4
EER97449	Sorghum	cytosol	67.69	36.38
TraesCS2A01G189600.1	Wheat	cytosol	68.37	36.28
Zm00001d006701_P001	Maize	cytosol	68.03	36.1
HORVU2Hr1G036280.1	Barley	cytosol	68.37	36.09
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	49.66	35.78
Zm00001d021946_P001	Maize	cytosol	67.69	35.66
EER95348	Sorghum	cytosol	64.63	35.45
Zm00001d048199_P001	Maize	mitochondrion, nucleus	64.63	35.45
HORVU4Hr1G071670.1	Barley	cytosol	64.29	35.26
TraesCS4D01G266400.1	Wheat	cytosol	63.95	35.07
Zm00001d030500_P001	Maize	nucleus	63.95	34.69
TraesCS4B01G266700.1	Wheat	cytosol	63.27	34.64
TraesCS5D01G419400.2	Wheat	cytosol	64.29	34.36
GSMUA_Achr4P11050_001	Banana	nucleus	46.26	34.26
Bra026237.1-P	Field mustard	plastid	59.86	32.9
TraesCS4A01G039000.1	Wheat	nucleus	54.42	32.72
GSMUA_AchrUn_...	Banana	nucleus	46.6	32.01
Bra021063.1-P	Field mustard	plastid	57.48	31.89
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	32.65	30.28
HORVU5Hr1G099160.1	Barley	plastid	62.24	29.05
Bra012280.1-P	Field mustard	cytosol	50.68	27.14
Bra028312.1-P	Field mustard	cytosol	40.14	25.99
Bra022596.1-P	Field mustard	plastid	40.48	20.55
KRH38269	Soybean	cytosol	22.45	18.7
Bra015584.1-P	Field mustard	cytosol	25.51	17.2
Bra033813.1-P	Field mustard	nucleus	32.99	16.67
Bra028391.1-P	Field mustard	nucleus	31.97	15.16
Bra031581.1-P	Field mustard	cytosol	32.65	14.37
Bra028390.1-P	Field mustard	cytosol	33.33	13.88
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	31.29	13.67
Bra031580.1-P	Field mustard	cytosol	31.63	13.48
Bra030688.1-P	Field mustard	nucleus	34.01	13.46
Bra035653.1-P	Field mustard	cytosol	31.63	12.88

Protein Annotations

EnsemblPlants:Bra026077.1	EnsemblPlants:Bra026077.1-P	EnsemblPlantsGene:Bra026077	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF57	PFAM:PF03514	PFscan:PS50985	UniParc:UPI000253F183	UniProt:M4EBB8
MapMan:15.5.12	:	:	:	:	:

Description

AT1G50600 (E=8e-171) SCL5 | SCL5; transcription factor

Coordinates

chrA06:-:6231409..6232293

Molecular Weight (calculated)

33160.8 Da

IEP (calculated)

6.898

GRAVY (calculated)

-0.249

Length

294 amino acids

Sequence
(BLAST)

001: MHILYEACPY FKFGYESANG AIAEAVKNES FVHIIDFQIS QGGQWVSLIR ALGARPGGPP RVRITGIDDP RSSFARQGGL ELVGQRLGKL AEMCGVPFEF
101: HGAALCCTEV EIEKLGVRNG EALAVNFPLV LHHMPDESVT VENHRDRLLR LVKRLSPNVV TLVEQEANTN TAPFLPRFVE TMNHYLAVFE SIDVKLARDH
201: KERINVEQHC LAREVVNLIG CEGVEREERH EPLGKWRSRF HMAGFKPYPL SSYANATIKG LLESYSEKYT LEERDGALYL GWKNQPLITS CAWR

Best Arabidopsis Sequence Match ( AT1G50600.2 )
(BLAST)

001: MRIKMRLSVF IIPLVESRQA SGIINKQSTS LLIRFSLYLE ASISTKSFFS KSQRISQTQS PICLSANYYQ PDNLDMEATQ KHMIQEGSSM FYHQPSSVKQ
101: MDLSVQTFDS YCTLESSSGT KSHPCLNNKN NSSSTTSFSS NESPISQANN NNLSRFNNHS PEENNNSPLS GSSATNTNET ELSLMLKDLE TAMMEPDVDN
201: SYNNQGGFGQ QHGVVSSAMY RSMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT
301: GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPNVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM
401: CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID
501: VKLARDHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLITSCAW
601: R

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.