Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 76.38 | 82.63 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 81.55 | 80.36 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 60.89 | 77.46 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 68.82 | 69.59 |
| HORVU5Hr1G099160.1 | Barley | plastid | 79.89 | 68.73 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 40.22 | 66.46 |
| Bra026077.1-P | Field mustard | cytosol | 34.69 | 63.95 |
| Bra015156.1-P | Field mustard | cytosol | 37.45 | 63.84 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 44.28 | 60.45 |
| CDY00883 | Canola | cytosol | 44.1 | 59.01 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 58.86 | 58.53 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.39 | 57.48 |
| AT2G04890.1 | Thale cress | cytosol | 43.73 | 57.38 |
| PGSC0003DMT400015696 | Potato | cytosol | 56.64 | 57.38 |
| CDY71156 | Canola | cytosol, plastid | 41.14 | 57.18 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 56.83 | 56.51 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 56.64 | 56.33 |
| CDY07309 | Canola | cytosol | 24.91 | 56.25 |
| KRH14104 | Soybean | cytosol | 56.46 | 56.15 |
| CDY05700 | Canola | cytosol, plastid | 51.48 | 56.14 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 51.48 | 56.14 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 51.48 | 56.14 |
| CDY71174 | Canola | cytosol, plastid | 51.48 | 56.14 |
| AT5G48150.4 | Thale cress | cytosol | 50.74 | 56.12 |
| KRH74015 | Soybean | cytosol | 55.9 | 56.01 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 51.29 | 55.94 |
| CDY19966 | Canola | cytosol | 50.55 | 55.47 |
| CDY37124 | Canola | nucleus | 42.8 | 55.24 |
| CDY22807 | Canola | nucleus | 42.8 | 55.24 |
| Bra036185.1-P | Field mustard | cytosol | 50.37 | 55.15 |
| CDY00074 | Canola | cytosol, plastid | 50.55 | 55.13 |
| KRH73868 | Soybean | cytosol | 54.24 | 53.95 |
| KRH14274 | Soybean | cytosol | 54.06 | 53.76 |
| Zm00001d006701_P001 | Maize | cytosol | 54.8 | 53.61 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 53.87 | 53.58 |
| PGSC0003DMT400057111 | Potato | nucleus | 52.77 | 53.26 |
| Solyc07g065270.1.1 | Tomato | nucleus | 52.77 | 53.16 |
| PGSC0003DMT400034763 | Potato | cytosol | 51.48 | 52.25 |
| KRG98562 | Soybean | nucleus | 52.4 | 52.11 |
| Bra018860.1-P | Field mustard | nucleus | 50.37 | 52.0 |
| Zm00001d021946_P001 | Maize | cytosol | 53.32 | 51.79 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 51.48 | 51.48 |
| KRH11548 | Soybean | nucleus | 52.21 | 51.27 |
| KRH01979 | Soybean | cytosol | 51.48 | 51.19 |
| KRH36572 | Soybean | cytosol | 51.66 | 51.09 |
| KRH46306 | Soybean | cytosol | 51.29 | 51.01 |
| KRH51175 | Soybean | cytosol | 50.55 | 50.55 |
| PGSC0003DMT400060553 | Potato | cytosol | 47.97 | 49.62 |
| PGSC0003DMT400021748 | Potato | nucleus | 49.45 | 47.94 |
| AT4G17230.1 | Thale cress | cytosol | 46.13 | 47.26 |
| CDY35589 | Canola | cytosol | 46.13 | 47.08 |
| KRH38269 | Soybean | cytosol | 30.63 | 47.03 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 47.97 | 47.02 |
| CDY58168 | Canola | plastid | 45.76 | 46.79 |
| Bra021063.1-P | Field mustard | plastid | 45.76 | 46.79 |
| CDY50128 | Canola | cytosol, plastid | 45.76 | 46.53 |
| CDY42968 | Canola | cytosol | 45.76 | 46.36 |
| Bra026237.1-P | Field mustard | plastid | 45.76 | 46.36 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 50.37 | 45.42 |
| Zm00001d006551_P001 | Maize | golgi, mitochondrion | 44.1 | 38.74 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 22.14 | 36.04 |
| Zm00001d038225_P001 | Maize | cytosol | 35.61 | 34.4 |
| Zm00001d030744_P001 | Maize | cytosol | 22.88 | 25.2 |
| Zm00001d034664_P001 | Maize | plastid | 23.8 | 23.08 |
| Zm00001d051461_P001 | Maize | cytosol | 25.28 | 22.57 |
| Zm00001d026050_P001 | Maize | mitochondrion, nucleus, plastid | 24.72 | 21.51 |
| Zm00001d003553_P001 | Maize | cytosol | 23.8 | 21.25 |
| Zm00001d048681_P001 | Maize | cytosol | 22.14 | 21.09 |
| Zm00001d002573_P001 | Maize | cytosol | 24.17 | 21.03 |
| Zm00001d048601_P001 | Maize | cytosol | 24.72 | 20.87 |
| Zm00001d011070_P001 | Maize | cytosol | 23.99 | 20.73 |
| Zm00001d035671_P001 | Maize | cytosol | 23.43 | 20.29 |
| Zm00001d048588_P001 | Maize | cytosol | 23.25 | 19.87 |
| Zm00001d048600_P001 | Maize | nucleus | 23.43 | 19.69 |
| Zm00001d041536_P001 | Maize | cytosol | 25.46 | 19.44 |
| Zm00001d048602_P001 | Maize | cytosol | 23.43 | 19.07 |
| Zm00001d007713_P001 | Maize | cytosol | 21.03 | 19.03 |
| Zm00001d028603_P001 | Maize | cytosol | 25.09 | 18.53 |
| Zm00001d007248_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 18.45 | 18.48 |
| Zm00001d048682_P001 | Maize | nucleus | 21.22 | 18.28 |
| Zm00001d033166_P001 | Maize | nucleus | 23.99 | 17.76 |
| Zm00001d035670_P001 | Maize | cytosol | 23.43 | 17.49 |
| Zm00001d048604_P001 | Maize | cytosol | 24.54 | 17.39 |
| Zm00001d042907_P001 | Maize | cytosol | 25.46 | 17.06 |
| Zm00001d047813_P002 | Maize | nucleus | 25.09 | 16.41 |
| Zm00001d048603_P001 | Maize | cytosol | 25.83 | 9.84 |
Protein Annotations
| EntrezGene:100502252 | MapMan:15.5.12 | EMBL:BT087542 | UniProt:C4J9P5 | InterPro:CIGR2 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR005202 | ProteinID:ONM00996.1 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF31 |
| InterPro:TF_GRAS | UniParc:UPI0001A4C919 | EnsemblPlantsGene:Zm00001d030500 | EnsemblPlants:Zm00001d030500_P001 | EnsemblPlants:Zm00001d030500_T001 | SEG:seg |
Description
GRAS-transcription factor 21
Coordinates
chr1:-:139651718..139653346
Molecular Weight (calculated)
59917.7 Da
IEP (calculated)
6.140
GRAVY (calculated)
-0.245
Length
542 amino acids
Sequence
(BLAST)
(BLAST)
001: MSARDSNHSY KCSDDSQMPY YNNSAPVGEN GRIHMAENSL GHHYSSSDIG SQRINNSNPQ VFEAQYCTLE SSSANGVYPA QSSTSSHSIS PLSGSPLSQH
101: DSHSDHTYSS PPSASCLTEV ADLLIKQKEL ENSIVGPGLD ISSDCSRSLL QAHVPVRPDN WRQLLGINGG DLMQVVIACG KAVAENDVFA TELLISELGH
201: LVSVSGDPMQ RLGAYMLEGI VARLSSSGSM LYKSLKCKEP TSSELMSYMH LLYEICPFYK FGYMSANGAI AEAIKGENFV HIIDFQIAQG SQWVTLLQAL
301: AARPGGPPYI RITGIDDSNS AYARGGGLDI VGRTLCDVAN SCGLPFEFNA VPAASHEVEL QHLAIRHGEI IAVNFAYQLH HVPDESVSTE NHRDRIIRMI
401: KSINPRVVTL VEQESNTNTA PFFPRYMETL NYYTAMFESI DVALPRDDRR RMSAEQHCVA RDIVNLIACE GAERVERHEL FGKWKSRFAM AGFRPYPLSS
501: VVNNTINTLL HTYNSYYRLE ERDGVLYLGW KNRVLVVSSA WC
101: DSHSDHTYSS PPSASCLTEV ADLLIKQKEL ENSIVGPGLD ISSDCSRSLL QAHVPVRPDN WRQLLGINGG DLMQVVIACG KAVAENDVFA TELLISELGH
201: LVSVSGDPMQ RLGAYMLEGI VARLSSSGSM LYKSLKCKEP TSSELMSYMH LLYEICPFYK FGYMSANGAI AEAIKGENFV HIIDFQIAQG SQWVTLLQAL
301: AARPGGPPYI RITGIDDSNS AYARGGGLDI VGRTLCDVAN SCGLPFEFNA VPAASHEVEL QHLAIRHGEI IAVNFAYQLH HVPDESVSTE NHRDRIIRMI
401: KSINPRVVTL VEQESNTNTA PFFPRYMETL NYYTAMFESI DVALPRDDRR RMSAEQHCVA RDIVNLIACE GAERVERHEL FGKWKSRFAM AGFRPYPLSS
501: VVNNTINTLL HTYNSYYRLE ERDGVLYLGW KNRVLVVSSA WC
001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
Arabidopsis Description
PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.