Factsheet for Solyc05g054170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021748	Potato	nucleus	93.99	55.99
Solyc11g012510.1.1	Tomato	mitochondrion	61.86	38.01
Solyc04g014830.1.1	Tomato	mitochondrion	55.86	33.63
VIT_00s0463g00020.t01	Wine grape	nucleus	53.45	32.66
KRH11548	Soybean	nucleus	49.85	30.07
KRH36572	Soybean	cytosol	48.95	29.74
KRH51175	Soybean	cytosol	48.05	29.52
KRH01979	Soybean	cytosol	46.85	28.62
AT4G17230.1	Thale cress	cytosol	45.35	28.54
CDY50128	Canola	cytosol, plastid	42.34	26.45
CDY35589	Canola	cytosol	42.04	26.37
Bra021063.1-P	Field mustard	plastid	41.74	26.23
CDY58168	Canola	plastid	41.74	26.23
CDY42968	Canola	cytosol	41.74	25.98
GSMUA_Achr4P07010_001	Banana	cytosol	25.53	25.91
Bra026237.1-P	Field mustard	plastid	41.14	25.61
GSMUA_AchrUn_...	Banana	nucleus	32.73	25.47
GSMUA_Achr4P11050_001	Banana	nucleus	30.03	25.19
Solyc07g047950.1.1	Tomato	mitochondrion	39.34	24.04
TraesCS4A01G039000.1	Wheat	nucleus	34.53	23.52
TraesCS5A01G409800.1	Wheat	nucleus, plastid	34.53	22.95
Solyc07g065270.1.1	Tomato	nucleus	36.94	22.86
EER95348	Sorghum	cytosol	36.04	22.39
Zm00001d048199_P001	Maize	mitochondrion, nucleus	35.74	22.2
Zm00001d030500_P001	Maize	nucleus	36.04	22.14
Os03t0193000-01	Rice	plastid	34.83	21.68
TraesCS4D01G266400.1	Wheat	cytosol	34.53	21.46
TraesCS5D01G419400.2	Wheat	cytosol	35.44	21.45
Os07t0583600-01	Rice	plasma membrane	34.83	21.32
HORVU4Hr1G071670.1	Barley	cytosol	34.23	21.27
TraesCS2D01G198200.1	Wheat	cytosol	35.44	21.26
TraesCS4B01G266700.1	Wheat	cytosol	34.23	21.23
TraesCS2A01G189600.1	Wheat	cytosol	35.14	21.12
TraesCS2B01G217500.1	Wheat	cytosol	34.83	20.94
HORVU2Hr1G036280.1	Barley	cytosol	34.53	20.65
EER97449	Sorghum	cytosol	33.63	20.48
TraesCS5A01G414000.1	Wheat	cytosol	25.83	20.19
Zm00001d006701_P001	Maize	cytosol	33.03	19.86
Zm00001d021946_P001	Maize	cytosol	33.03	19.71
HORVU5Hr1G099160.1	Barley	plastid	34.53	18.25
Solyc12g005340.1.1	Tomato	cytosol	29.13	17.38
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	29.43	16.81
Solyc06g035620.2.1	Tomato	cytosol	15.92	16.26
Solyc04g064550.1.1	Tomato	mitochondrion	26.43	15.63
Solyc06g036170.1.1	Tomato	nucleus	16.82	9.36
Solyc06g076280.1.1	Tomato	cytosol	19.82	8.82
Solyc10g086530.1.1	Tomato	cytosol	20.12	8.8
Solyc09g010920.1.1	Tomato	cytosol	19.82	8.67
Solyc03g025170.1.1	Tomato	nucleus	16.22	8.56
Solyc05g053090.1.1	Tomato	cytosol	18.32	8.21
Solyc01g100200.2.1	Tomato	nucleus	15.92	7.96
Solyc06g082530.1.1	Tomato	cytosol	14.71	7.5
Solyc04g011630.1.1	Tomato	cytosol	0.3	0.59

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	UniProt:K4C296	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF45
InterPro:Scarecrow-like_13	EnsemblPlantsGene:Solyc05g054170.2	EnsemblPlants:Solyc05g054170.2.1	InterPro:TF_GRAS	UniParc:UPI00027668FC	SEG:seg

Description

No Description!

Coordinates

chr5:-:64111515..64112957

Molecular Weight (calculated)

37055.5 Da

IEP (calculated)

4.712

GRAVY (calculated)

-0.304

Length

333 amino acids

Sequence
(BLAST)

001: MRASQIPQSS GGVHKLCHQP TANFEQYYSP YHVVNNNSSD TSSSGTQLSY QTQNDKFFTL DSLPDAGYVS YDSPPAVSVS SNWSPFSPQC SQSYISDQHH
101: SSDNTYGSPL SGCSVINDGN ELKHVLREMA NNLLGPGFDI DEDSSCSFNG EVSKPSKWNR VLEIAPSLDM KELLLACAEA ISDVEVTARD AQMNVLEQKV
201: SDADVTARDA LMNVLEQKVS VSGEPMQRLS AYMLEGLKAR IYSSGSNIYK MLKCKEPTGS ELISYMQVLY HICPYYRFAY TSANVVIEEA MRNESRIHII
301: DFQIAQGSQW VFLMQNLVLM IPNQLMHAVV DFT

Best Arabidopsis Sequence Match ( AT1G50600.3 )
(BLAST)

001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.