Factsheet for GSMUA_Achr4P07010_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04890.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P03610_001	Banana	cytosol	30.18	68.75
GSMUA_Achr4P11050_001	Banana	nucleus	82.93	68.51
GSMUA_AchrUn_...	Banana	nucleus	80.49	61.68
Bra015156.1-P	Field mustard	cytosol	47.56	49.06
TraesCS5A01G414000.1	Wheat	cytosol	62.5	48.12
CDY00883	Canola	cytosol	59.15	47.9
AT2G04890.1	Thale cress	cytosol	59.15	46.97
AT5G48150.4	Thale cress	cytosol	69.51	46.53
Bra026077.1-P	Field mustard	cytosol	41.46	46.26
VIT_12s0057g00560.t01	Wine grape	cytosol	75.3	45.32
CDX86324	Canola	cytosol, nucleus, plastid	67.38	44.47
CDY05700	Canola	cytosol, plastid	67.38	44.47
TraesCS5A01G409800.1	Wheat	nucleus, plastid	67.68	44.31
CDY71174	Canola	cytosol, plastid	67.07	44.27
CDY54511	Canola	cytosol, nucleus, plastid	67.07	44.27
Bra020715.1-P	Field mustard	cytosol, plastid	67.07	44.27
CDY19966	Canola	cytosol	66.46	44.13
PGSC0003DMT400015696	Potato	cytosol	71.65	43.93
VIT_19s0090g01740.t01	Wine grape	cytosol	72.87	43.85
Bra036185.1-P	Field mustard	cytosol	66.16	43.84
CDY00074	Canola	cytosol, plastid	66.16	43.66
Os07t0583600-01	Rice	plasma membrane	72.26	43.57
Solyc07g047950.1.1	Tomato	mitochondrion	72.26	43.49
KRH14104	Soybean	cytosol	71.65	43.12
KRH74015	Soybean	cytosol	71.04	43.07
EER97449	Sorghum	cytosol	71.34	42.78
PGSC0003DMT400057111	Potato	nucleus	69.21	42.27
Solyc07g065270.1.1	Tomato	nucleus	69.21	42.19
TraesCS2B01G217500.1	Wheat	cytosol	71.04	42.06
Zm00001d006701_P001	Maize	cytosol	71.04	42.06
CDY71156	Canola	cytosol, plastid	50.0	42.05
TraesCS2D01G198200.1	Wheat	cytosol	69.82	41.26
TraesCS2A01G189600.1	Wheat	cytosol	69.51	41.16
HORVU2Hr1G036280.1	Barley	cytosol	69.51	40.93
TraesCS5D01G419400.2	Wheat	cytosol	68.29	40.73
Bra018860.1-P	Field mustard	nucleus	64.94	40.57
Zm00001d021946_P001	Maize	cytosol	68.9	40.5
Zm00001d030500_P001	Maize	nucleus	66.46	40.22
GSMUA_Achr6P11780_001	Banana	cytosol	41.77	40.06
Zm00001d048199_P001	Maize	mitochondrion, nucleus	64.94	39.74
Os03t0193000-01	Rice	plastid	64.63	39.63
EER95348	Sorghum	cytosol	64.33	39.37
CDY37124	Canola	nucleus	49.39	38.57
CDY22807	Canola	nucleus	49.39	38.57
KRH14274	Soybean	cytosol	64.02	38.53
VIT_00s0463g00020.t01	Wine grape	nucleus	63.41	38.17
TraesCS4D01G266400.1	Wheat	cytosol	62.2	38.06
HORVU4Hr1G071670.1	Barley	cytosol	62.2	38.06
TraesCS4B01G266700.1	Wheat	cytosol	61.89	37.8
KRH73868	Soybean	cytosol	62.8	37.8
KRH11548	Soybean	nucleus	63.11	37.5
KRG98562	Soybean	nucleus	62.2	37.43
KRH36572	Soybean	cytosol	62.5	37.41
KRH46306	Soybean	cytosol	61.59	37.06
PGSC0003DMT400060553	Potato	cytosol	58.84	36.83
PGSC0003DMT400034763	Potato	cytosol	59.76	36.7
Solyc11g012510.1.1	Tomato	mitochondrion	60.06	36.35
KRH51175	Soybean	cytosol	59.45	35.98
KRH01979	Soybean	cytosol	59.76	35.96
AT1G50600.2	Thale cress	golgi, mitochondrion	65.55	35.77
HORVU5Hr1G099160.1	Barley	plastid	68.29	35.56
TraesCS4A01G039000.1	Wheat	nucleus	51.83	34.76
Solyc04g014830.1.1	Tomato	mitochondrion	58.23	34.54
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	54.27	34.23
PGSC0003DMT400021748	Potato	nucleus	58.23	34.17
CDY07309	Canola	cytosol	25.0	34.17
GSMUA_Achr6P24310_001	Banana	cytosol	55.18	33.83
Bra021063.1-P	Field mustard	plastid	52.74	32.64
CDY58168	Canola	plastid	52.74	32.64
CDY50128	Canola	cytosol, plastid	52.44	32.27
CDY35589	Canola	cytosol	51.83	32.02
AT4G17230.1	Thale cress	cytosol	51.52	31.95
Bra026237.1-P	Field mustard	plastid	51.83	31.78
CDY42968	Canola	cytosol	51.52	31.59
GSMUA_Achr10P...	Banana	cytosol	50.0	29.71
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	50.91	28.64
KRH38269	Soybean	cytosol	30.79	28.61
GSMUA_Achr3P02410_001	Banana	nucleus	50.3	28.11
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	25.91	25.53
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	32.93	19.22
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	34.15	19.18
GSMUA_AchrUn_...	Banana	plastid	32.93	18.46
GSMUA_Achr9P18770_001	Banana	cytosol	32.01	18.45
GSMUA_Achr1P03650_001	Banana	mitochondrion	32.01	18.42
GSMUA_Achr8P02550_001	Banana	nucleus	20.12	16.84
GSMUA_Achr10P...	Banana	nucleus	21.95	16.29
GSMUA_Achr5P08320_001	Banana	cytosol	21.95	16.04
GSMUA_Achr6P34090_001	Banana	nucleus	27.74	14.87
GSMUA_Achr4P24960_001	Banana	cytosol	21.04	14.23
GSMUA_Achr10P...	Banana	cytosol	25.91	14.19
GSMUA_AchrUn_...	Banana	cytosol	26.83	13.35
GSMUA_Achr7P15080_001	Banana	cytosol	22.26	12.21

Protein Annotations

EnsemblPlants:GSMUA_Achr4P07010_001	EnsemblPlants:GSMUA_Achr4T07010_001	EnsemblPlantsGene:GSMUA_Achr4G07010_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:CIGR2	InterPro:IPR005202
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF31	PFAM:PF03514	PFscan:PS50985	UniParc:UPI000294F181
UniProt:M0SLR8	MapMan:15.5.12	:	:	:	:

Description

Scarecrow-like transcription factor PAT1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G07010_001]

Coordinates

chr4:-:5226490..5228075

Molecular Weight (calculated)

37370.8 Da

IEP (calculated)

5.937

GRAVY (calculated)

-0.220

Length

328 amino acids

Sequence
(BLAST)

001: MHNSPSSQSF SASCVTEDPN DLKIRLREIE TAMLGPDSDI VESFENTYPG HLSLEPDAWR QVMGIPRGDL KQLLIACARA VADNDMINIE WLISELKQMV
101: SVSGEPFQRL GAYLLEGLIA RLSSSGSSIY KALKCKEPTS SDLLSYMHIL YEVCPYFKFG YLSANGAIAE ASVSTRNHRD RLLRLVKSLS PKVVTLVEQE
201: SNTNTTPFFP RFLETMEYYT AMFESIDVTL PRDNKERISV EQHCLARDIV NIVACEDAER VERHELFGKW KSRFLMAGFR PCPLSPLVNA TIKTLLQNYS
301: EHYWLEERDG VLYLGWRNRP LVVSCAWR

Best Arabidopsis Sequence Match ( AT2G04890.1 )
(BLAST)

001: MDNVRGSIML QPLPEIAESI DDAICHELSM WPDDAKDLLL IVEAISRGDL KLVLVACAKA VSENNLLMAR WCMGELRGMV SISGEPIQRL GAYMLEGLVA
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK

Arabidopsis Description

SCL21SCL21 [Source:UniProtKB/TrEMBL;Acc:A0A178VWV4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.