Factsheet for GSMUA_Achr1P03650_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18770_001	Banana	cytosol	65.61	65.73
GSMUA_Achr4P24960_001	Banana	cytosol	54.21	63.71
GSMUA_AchrUn_...	Banana	plastid	64.04	62.39
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	62.98	61.47
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	59.3	60.14
GSMUA_Achr8P03610_001	Banana	cytosol	11.23	44.44
Zm00001d002573_P001	Maize	cytosol	47.54	43.5
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	47.37	43.34
Os04t0580300-01	Rice	cytosol, nucleus, plastid	46.84	43.13
CDY27821	Canola	cytosol	33.51	43.02
Os02t0681900-01	Rice	cytosol	46.14	42.56
Zm00001d051461_P001	Maize	cytosol	45.26	42.5
CDY00533	Canola	cytosol	33.16	42.38
EES05727	Sorghum	cytosol	46.32	41.97
Bra028312.1-P	Field mustard	cytosol	33.33	41.85
TraesCS2D01G393200.1	Wheat	cytosol	45.26	41.15
TraesCS2B01G413500.1	Wheat	cytosol	45.44	41.05
GSMUA_Achr6P11780_001	Banana	cytosol	24.39	40.64
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	44.91	40.57
EES12703	Sorghum	cytosol, nucleus, plastid	46.14	40.34
HORVU2Hr1G094040.2	Barley	cytosol, plastid	26.49	39.22
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	40.35	39.05
Solyc06g036170.1.1	Tomato	nucleus	38.25	36.45
CDX91655	Canola	cytosol	37.37	36.22
CDY27063	Canola	cytosol, plastid	36.49	36.11
Bra022596.1-P	Field mustard	plastid	36.67	36.1
PGSC0003DMT400076932	Potato	nucleus	37.89	35.64
KRH38397	Soybean	plastid	32.98	34.81
Solyc03g025170.1.1	Tomato	nucleus	38.42	34.71
KRG91573	Soybean	plastid	36.14	34.68
KRH08880	Soybean	plastid	39.3	34.09
AT5G52510.1	Thale cress	nucleus	38.25	34.06
KRH35251	Soybean	plastid	34.91	33.73
PGSC0003DMT400026240	Potato	nucleus, plastid	38.6	33.64
GSMUA_Achr4P07010_001	Banana	cytosol	18.42	32.01
GSMUA_Achr10P...	Banana	cytosol	30.0	30.98
GSMUA_Achr3P02410_001	Banana	nucleus	30.35	29.47
GSMUA_Achr4P11050_001	Banana	nucleus	19.82	28.46
GSMUA_AchrUn_...	Banana	nucleus	20.35	27.1
GSMUA_Achr6P24310_001	Banana	cytosol	24.04	25.61
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	20.18	22.12
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	20.18	19.73
GSMUA_Achr5P08320_001	Banana	cytosol	14.56	18.49
GSMUA_Achr8P02550_001	Banana	nucleus	11.58	16.84
GSMUA_Achr10P...	Banana	nucleus	12.98	16.74
GSMUA_Achr6P34090_001	Banana	nucleus	17.37	16.18
GSMUA_Achr10P...	Banana	cytosol	16.32	15.53
GSMUA_Achr7P15080_001	Banana	cytosol	14.91	14.21
GSMUA_AchrUn_...	Banana	cytosol	15.79	13.66

Protein Annotations

EnsemblPlants:GSMUA_Achr1P03650_001	EnsemblPlants:GSMUA_Achr1T03650_001	EnsemblPlantsGene:GSMUA_Achr1G03650_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF4	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000295417B
UniProt:M0RWS3	MapMan:15.5.12	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G03650_001]

Coordinates

chr1:+:3012949..3014724

Molecular Weight (calculated)

60951.7 Da

IEP (calculated)

8.397

GRAVY (calculated)

-0.114

Length

570 amino acids

Sequence
(BLAST)

001: MASGFPGREL GLGAGGRGGT LLKRTLADME IQHQQQQMQL QLQHQHQHQQ SLFLRSVKQR TLAAPSIATL SPAVVGAFPC NSFSAATQSS VSTSSTVTSA
101: GFAFPRRPEL LAGSVPEVRS SGSLRDQLKE LERRLLLDDE EEEASASGSA VTHAAWSEAI QSLISSSSTI SSSASCSPPS SMPSPPPPPT GTSRQMLLDT
201: ATAIGEGNLH AATANLAVIK AAANPRGDAE QRLTAMMYAT LFSRLNNLQT GSSHAVAELR SPEHFAATQM LYDLSPCFKL AFIAANHAIL EATKDEPNIH
301: ILDFEVGHGS QYAAFLHALT QRLRHRPTIR VTAVVDPSSP FTNINSGGLR VVGERIEKLA ERVGVGLRFS VVSRRPEELD AVALGCEPGE VLIVNLAFVL
401: SRVADESVSL ANPRDEILRR VRALQPRLVT LAEQEINTST AAFPARFAEA CVHYGALLES LEATAAAAVQ KGFAERARAE AGLARRAVNA VAREGQERVE
501: RCEVLGKWRA RMGMAGLKPV PLGPSSVEPV KYRLESAGSN PGFTIKEEVG GVALGFGWRG RVLTVLSAWR

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.