Factsheet for Bra028312.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00533	Canola	cytosol	97.58	99.33
Bra022596.1-P	Field mustard	plastid	77.97	61.14
AT5G52510.1	Thale cress	nucleus	81.72	57.97
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	56.61	43.63
Bra026077.1-P	Field mustard	cytosol	25.99	40.14
Solyc06g036170.1.1	Tomato	nucleus	52.64	39.97
Solyc03g025170.1.1	Tomato	nucleus	55.29	39.78
PGSC0003DMT400076932	Potato	nucleus	53.08	39.77
KRG91573	Soybean	plastid	51.76	39.56
KRH35251	Soybean	plastid	50.88	39.15
KRH08880	Soybean	plastid	54.63	37.75
Bra015156.1-P	Field mustard	cytosol	26.43	37.74
PGSC0003DMT400026240	Potato	nucleus, plastid	53.96	37.46
KRH38397	Soybean	plastid	43.17	36.3
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	32.6	36.27
GSMUA_AchrUn_...	Banana	plastid	46.26	35.9
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	45.15	35.1
GSMUA_Achr9P18770_001	Banana	cytosol	43.39	34.62
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	42.51	34.34
GSMUA_Achr1P03650_001	Banana	mitochondrion	41.85	33.33
GSMUA_Achr4P24960_001	Banana	cytosol	33.7	31.55
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	42.95	31.3
Zm00001d002573_P001	Maize	cytosol	42.51	30.98
Os04t0580300-01	Rice	cytosol, nucleus, plastid	42.07	30.86
TraesCS2D01G393200.1	Wheat	cytosol	42.51	30.78
TraesCS2B01G413500.1	Wheat	cytosol	42.73	30.74
Os02t0681900-01	Rice	cytosol	41.19	30.26
HORVU2Hr1G094040.2	Barley	cytosol, plastid	25.33	29.87
Zm00001d051461_P001	Maize	cytosol	39.87	29.82
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	41.41	29.79
EES12703	Sorghum	cytosol, nucleus, plastid	41.63	28.99
EES05727	Sorghum	cytosol	40.09	28.93
Bra036185.1-P	Field mustard	cytosol	31.06	28.48
Bra020715.1-P	Field mustard	cytosol, plastid	30.84	28.17
Bra012280.1-P	Field mustard	cytosol	33.7	27.87
Bra018860.1-P	Field mustard	nucleus	30.4	26.29
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	18.28	26.18
Bra021063.1-P	Field mustard	plastid	29.07	24.91
Bra026237.1-P	Field mustard	plastid	29.3	24.86
Bra015584.1-P	Field mustard	cytosol	18.72	19.5
Bra033813.1-P	Field mustard	nucleus	22.69	17.7
Bra028391.1-P	Field mustard	nucleus	23.13	16.94
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	22.25	15.01
Bra031581.1-P	Field mustard	cytosol	22.03	14.97
Bra031580.1-P	Field mustard	cytosol	22.03	14.49
Bra028390.1-P	Field mustard	cytosol	21.37	13.74
Bra030688.1-P	Field mustard	nucleus	22.47	13.73
Bra035653.1-P	Field mustard	cytosol	21.59	13.57

Protein Annotations

EnsemblPlants:Bra028312.1	EnsemblPlants:Bra028312.1-P	EnsemblPlantsGene:Bra028312	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_8
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF130	PFAM:PF03514	PFscan:PS50985	SEG:seg
UniParc:UPI00025439BB	UniProt:M4EHP7	MapMan:15.5.12	:	:	:

Description

AT5G52510 (E=1e-181) | scarecrow-like transcription factor 8 (SCL8)

Coordinates

chrA01:-:18686783..18688147

Molecular Weight (calculated)

49265.3 Da

IEP (calculated)

5.051

GRAVY (calculated)

-0.245

Length

454 amino acids

Sequence
(BLAST)

001: MLNSLRELEK QLLDDDDAQG GDDDVSVITH SNSNSDWLHG LVTPNPNPVL SSSPSSSSSS SSPSTASTTT SVCSRQTVLE IATAIAEGKT EIASEILARV
101: SQTPSQRRNS EEKLVDFMVT ALRSRINPAE SSAPATELYG KEHIVSTQLL YELSPCFKLG FMAANLAILD ASGNKNDDGT SFHVIDFEIG EGGQYVHLLH
201: ALSTRRSGKN PLVVRITAVT NISDGFSVAG QRGEERLRTI GDRLSELSDG LGISLKFNVV AGLRLSDLSR ESLGCHPDEP LAVNLAFKLY RVPDESVCME
301: NPRDELLRRV KGLNPSVVTL VEEEMNSNTA PFLGRVSESC ACYGALLDSV ESTVPSSYSD RAKVEEGIGR KLINAVACEG IDRIERCEVF GKWRMRMSMA
401: GFELMPLSEK IAESMKSRLS NGNRVHPGFT VKEENGGVCF GWMGRTLAVA SAWR

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.