Factsheet for Bra022596.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27063	Canola	cytosol, plastid	96.55	97.05
Bra028312.1-P	Field mustard	cytosol	61.14	77.97
AT5G52510.1	Thale cress	nucleus	76.68	69.38
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	49.4	48.56
KRH35251	Soybean	plastid	46.8	45.93
KRG91573	Soybean	plastid	46.63	45.45
KRH08880	Soybean	plastid	50.26	44.29
Solyc03g025170.1.1	Tomato	nucleus	48.01	44.06
Solyc06g036170.1.1	Tomato	nucleus	45.42	43.98
KRH38397	Soybean	plastid	40.76	43.7
PGSC0003DMT400076932	Potato	nucleus	45.6	43.56
PGSC0003DMT400026240	Potato	nucleus, plastid	47.67	42.2
Bra026077.1-P	Field mustard	cytosol	20.55	40.48
GSMUA_AchrUn_...	Banana	plastid	39.9	39.49
Bra015156.1-P	Field mustard	cytosol	21.07	38.36
GSMUA_Achr9P18770_001	Banana	cytosol	37.65	38.31
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	38.34	38.01
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	36.79	37.9
GSMUA_Achr4P24960_001	Banana	cytosol	30.74	36.7
GSMUA_Achr1P03650_001	Banana	mitochondrion	36.1	36.67
Os02t0681900-01	Rice	cytosol	38.34	35.92
Os04t0580300-01	Rice	cytosol, nucleus, plastid	38.0	35.54
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	25.04	35.54
Zm00001d051461_P001	Maize	cytosol	36.79	35.09
TraesCS2B01G413500.1	Wheat	cytosol	37.82	34.71
TraesCS2D01G393200.1	Wheat	cytosol	37.48	34.61
Zm00001d002573_P001	Maize	cytosol	36.96	34.35
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	36.79	34.19
EES05727	Sorghum	cytosol	37.13	34.18
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	36.96	33.91
EES12703	Sorghum	cytosol, nucleus, plastid	35.92	31.9
HORVU2Hr1G094040.2	Barley	cytosol, plastid	20.03	30.13
Bra036185.1-P	Field mustard	cytosol	24.87	29.09
Bra020715.1-P	Field mustard	cytosol, plastid	24.87	28.97
Bra018860.1-P	Field mustard	nucleus	26.25	28.95
Bra012280.1-P	Field mustard	cytosol	27.12	28.6
Bra021063.1-P	Field mustard	plastid	24.35	26.6
Bra026237.1-P	Field mustard	plastid	24.35	26.36
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	14.16	25.87
Bra015584.1-P	Field mustard	cytosol	15.54	20.64
Bra033813.1-P	Field mustard	nucleus	19.86	19.76
Bra028391.1-P	Field mustard	nucleus	20.21	18.87
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	19.69	16.94
Bra031581.1-P	Field mustard	cytosol	18.83	16.32
Bra030688.1-P	Field mustard	nucleus	20.55	16.02
Bra031580.1-P	Field mustard	cytosol	18.83	15.8
Bra028390.1-P	Field mustard	cytosol	18.83	15.44
Bra035653.1-P	Field mustard	cytosol	18.48	14.82

Protein Annotations

EnsemblPlants:Bra022596.1	EnsemblPlants:Bra022596.1-P	EnsemblPlantsGene:Bra022596	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_8
InterPro:TF_GRAS	ncoils:Coil	PANTHER:PTHR31636	PANTHER:PTHR31636:SF130	PFAM:PF03514	PFscan:PS50985
SEG:seg	UniParc:UPI0002546FC8	UniProt:M4E1E8	MapMan:15.5.12	:	:

Description

AT5G52510 (E=2e-172) | scarecrow-like transcription factor 8 (SCL8)

Coordinates

chrA02:-:8638122..8639861

Molecular Weight (calculated)

62286.0 Da

IEP (calculated)

5.910

GRAVY (calculated)

-0.260

Length

579 amino acids

Sequence
(BLAST)

001: MVSGFPSGGG DGRSTPGGFG TVVNNNPQPT YRSQSPGIFL DQTGNRFSGG KRTLADFQAA QQQQAAVNAF LLRSVKPRTF QNLQSPTIGL TSVNDMGLFG
101: GSSQTQHQTD LVGIRMGYGS SIEPVQNLNR VEDSKNMLSS SLRELEKQLL EDDDESDAQG GGDDVSTITH SNSDWLHRVL TPVLSSSPSS ASSPSTTCSR
201: QTVMEIAAAV AEGKTEIAAE LLACVSPTPN QKTNSEERLV NFMVTALRLR INPAEKESRA PPSPATATEL YGKEHLISTQ LLYELSPCFK LGFMAANLAI
301: LDAAGDNHDG GGVLMHVVDF EIGDGGQYVN LLHALSTRRS GDDKPLVVKI TAVTNHGGER RLKAVGDRLS QLGDRLGVSL RFKVVASLRL GDISRESLGC
401: GPDEPLAVNL AFKLYRVPDE SVCMENPRDA LLRRVKGLEP RVVTLVEQEM NSNTAPFLGR VSEACACYGA LLDSVESSVA SSNLDRAKVE EGIGRKLINA
501: VACEGIDRIE RCEVFGKWRM RMSMAGFELM PVSEKIAESM KSRLGNGNIV HSGFTVKEDD GGVCFGWMGR TLAVASAWR

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.