Factsheet for Bra012280.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61060	Canola	cytosol	95.08	96.85
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	65.03	87.5
AT1G21450.1	Thale cress	nucleus	82.7	76.56
GSMUA_Achr6P11780_001	Banana	cytosol	43.35	69.59
KRH15917	Soybean	cytosol	62.3	57.87
KRH18097	Soybean	cytosol	62.11	57.7
KRH64568	Soybean	cytosol	62.11	57.21
KRH53364	Soybean	cytosol	61.75	56.5
VIT_04s0044g01370.t01	Wine grape	nucleus	58.29	56.34
GSMUA_Achr10P...	Banana	cytosol	55.74	55.43
Solyc04g064550.1.1	Tomato	mitochondrion	56.47	55.06
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	55.92	54.92
GSMUA_Achr3P02410_001	Banana	nucleus	54.64	51.11
Bra026077.1-P	Field mustard	cytosol	27.14	50.68
Os01t0881500-01	Rice	cytosol	50.27	49.91
HORVU3Hr1G091250.1	Barley	cytosol	49.91	49.64
TraesCS3A01G408000.1	Wheat	cytosol	49.73	49.46
TraesCS3B01G441600.1	Wheat	cytosol	49.73	49.46
TraesCS3D01G403100.1	Wheat	cytosol	49.73	49.46
KXG33821	Sorghum	cytosol	50.82	49.03
Bra015156.1-P	Field mustard	cytosol	28.23	48.74
EES18257	Sorghum	cytosol	49.91	48.67
Zm00001d038225_P001	Maize	cytosol	48.82	47.77
Bra036185.1-P	Field mustard	cytosol	37.7	41.82
Bra020715.1-P	Field mustard	cytosol, plastid	36.98	40.85
Bra018860.1-P	Field mustard	nucleus	36.98	38.67
Bra026237.1-P	Field mustard	plastid	36.79	37.76
Bra021063.1-P	Field mustard	plastid	35.88	37.17
Bra028312.1-P	Field mustard	cytosol	27.87	33.7
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	16.39	28.39
Bra022596.1-P	Field mustard	plastid	28.6	27.12
Bra015584.1-P	Field mustard	cytosol	17.12	21.56
Bra028391.1-P	Field mustard	nucleus	23.13	20.48
Bra033813.1-P	Field mustard	nucleus	19.85	18.73
Bra031581.1-P	Field mustard	cytosol	22.77	18.71
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	22.77	18.57
Bra031580.1-P	Field mustard	cytosol	22.4	17.83
Bra035653.1-P	Field mustard	cytosol	22.77	17.31
Bra028390.1-P	Field mustard	cytosol	22.22	17.28
Bra030688.1-P	Field mustard	nucleus	23.32	17.23

Protein Annotations

EnsemblPlants:Bra012280.1	EnsemblPlants:Bra012280.1-P	EnsemblPlantsGene:Bra012280	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_1
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF10	PFAM:PF03514	PFscan:PS50985	SEG:seg
UniParc:UPI0002541518	UniProt:M4D720	MapMan:15.5.12	:	:	:

Description

AT1G21450 (E=4e-208) SCL1 | SCL1 (SCARECROW-LIKE 1); transcription factor

Coordinates

chrA07:-:8849743..8851392

Molecular Weight (calculated)

61118.5 Da

IEP (calculated)

4.778

GRAVY (calculated)

-0.311

Length

549 amino acids

Sequence
(BLAST)

001: MVEQTARVMS LVSSAEPSAA AYKNPKLYSL NENGYNSGGG TSVEIFDPDK SKNTCLTHDS YPSQSYFLES PTEQHLVASG AASVSSFGSL DSFPYQSRLV
101: PGSSMEFDDE QMRSKIQELE RALLSDEDDN IMEGLDHLME IDNEWSYQNH SNKDSSSADS NSHSTSSKEV VSQATTPKKM LISCALALSE GKSEEALSLL
201: NELRQIVSIQ GDPSQRIAAY MVEGLAARMA ASGKFLYRAL RCKEPPSDER LAAMQVLFEV CPCFKFGYLA ANGAIVESIR DEKEVHIIDF DVNQGNQYMT
301: LIKTIAELPG KGPLMRLTGV DDPESVQRSV GGLRIIGLRL EQLAKDHGVS FKFEAVASKT SLIVSPSALG CKPGEALIVN FAFQLHHMPD ESVTVVNQRD
401: ELLHMVKGLN PKLVTVVEQD VNTNTCPFFP RFMEAYEYYS AVFDSLDVTL PRESQERMNV ERQCLARDIV NVVACEGEER IERYEVAGKW RARMMMAGFS
501: SRPMGSRVTR SIESLIKEEY CSKYKVKEEM GELLFCWEDK SLIVASAWR

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.