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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra012280.1-P Field mustard cytosol 96.85 95.08
CDY00377 Canola cytosol 93.69 91.82
CDY68224 Canola cytosol 85.34 79.86
CDY50240 Canola cytosol 85.16 79.69
AT1G21450.1 Thale cress nucleus 83.49 75.89
GSMUA_Achr6P11780_001 Banana cytosol 43.78 69.01
KRH15917 Soybean cytosol 63.82 58.21
KRH18097 Soybean cytosol 63.64 58.04
KRH64568 Soybean cytosol 62.71 56.71
KRH53364 Soybean cytosol 62.71 56.33
VIT_04s0044g01370.t01 Wine grape nucleus 59.18 56.16
GSMUA_Achr10P... Banana cytosol 56.59 55.25
Solyc04g064550.1.1 Tomato mitochondrion 57.14 54.71
PGSC0003DMT400063944 Potato cytosol, mitochondrion 56.59 54.56
GSMUA_Achr3P02410_001 Banana nucleus 55.29 50.77
Os01t0881500-01 Rice cytosol 51.39 50.09
HORVU3Hr1G091250.1 Barley cytosol 50.83 49.64
TraesCS3B01G441600.1 Wheat cytosol 50.65 49.46
TraesCS3A01G408000.1 Wheat cytosol 50.65 49.46
TraesCS3D01G403100.1 Wheat cytosol 50.65 49.46
KXG33821 Sorghum cytosol 51.95 49.21
EES18257 Sorghum cytosol 50.83 48.67
Zm00001d038225_P001 Maize cytosol 49.72 47.77
CDY00883 Canola cytosol 34.51 45.93
CDY07309 Canola cytosol 19.48 43.75
CDY71156 Canola cytosol, plastid 31.17 43.08
CDY19966 Canola cytosol 38.03 41.5
CDY00074 Canola cytosol, plastid 38.03 41.25
CDY22807 Canola nucleus 32.1 41.19
CDY37124 Canola nucleus 32.1 41.19
CDX86324 Canola cytosol, nucleus, plastid 37.85 41.05
CDY54511 Canola cytosol, nucleus, plastid 37.66 40.85
CDY05700 Canola cytosol, plastid 37.29 40.44
CDY71174 Canola cytosol, plastid 37.29 40.44
CDY35589 Canola cytosol 38.03 38.61
CDY42968 Canola cytosol 38.03 38.32
CDY58168 Canola plastid 36.92 37.55
CDY50128 Canola cytosol, plastid 36.92 37.34
CDY00533 Canola cytosol 28.57 34.53
CDY27821 Canola cytosol 28.2 34.23
CDX80265 Canola endoplasmic reticulum, golgi 16.33 27.76
CDY27063 Canola cytosol, plastid 29.13 27.26
CDX91655 Canola cytosol 29.13 26.7
CDX68389 Canola cytosol 4.08 25.88
CDY47877 Canola nucleus 23.56 20.55
CDY39530 Canola cytosol 23.38 20.36
CDY71578 Canola nucleus, plastid 19.67 20.35
CDY33040 Canola nucleus 22.08 19.93
CDY06266 Canola cytosol 23.19 19.78
CDX79750 Canola peroxisome 23.19 18.55
CDY07777 Canola cytosol, nucleus, peroxisome 23.01 18.43
CDX82987 Canola nucleus 20.22 18.14
CDX86475 Canola nucleus 23.75 18.03
CDY47878 Canola nucleus 22.82 17.8
CDY09912 Canola cytosol 23.01 17.71
CDY06265 Canola cytosol 22.63 17.68
CDY31749 Canola cytosol 23.56 17.49
CDX77228 Canola cytosol 21.71 17.41
CDY15616 Canola nucleus 22.26 16.78
CDX68388 Canola cytosol 12.62 16.43
CDY09911 Canola nucleus 17.63 16.27
Protein Annotations
EnsemblPlants:CDY61060EnsemblPlantsGene:GSBRNA2T00030498001GO:A0A078JAR6GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:Scarecrow-like_1
InterPro:TF_GRASPANTHER:PTHR31636PANTHER:PTHR31636:SF10PFAM:PF03514PFscan:PS50985ProteinID:CDY61060
ProteinID:CDY61060.1SEG:segUniParc:UPI0004EEA461UniProt:A0A078JAR6MapMan:15.5.12:
Description
BnaA07g37270DBnaA07g37270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAR6]
Coordinates
chrLK033951:-:3890..5978
Molecular Weight (calculated)
59994.2 Da
IEP (calculated)
4.844
GRAVY (calculated)
-0.309
Length
539 amino acids
Sequence
(BLAST)
001: MVEQTARVMS LVSSAEPSAA AYKNPKLYSL NENGYNSDGG ASVEIFDPDR SKNTSYFLDS PTEQHPVASG AASVSSFGSL DSFPYQSRPV LGSSMEFDDE
101: QMRSKIQELE RALLSDEDDN IMEGLDHLME IDNEWSYQNH SNKDSSSADS NSHSSSSKEV VSQATTPKQM LISCALALSE GKSEEALSLL NELRQIVSIQ
201: GDPSQRIAAY MVEGLAARMA ASGKFLYRAL RCKEPPSDER LAAMQVLFEV CPCFKFGYLA ANGAIVESIR DEKEVHIIDF DVNQGNQYMT LIKTIAELPG
301: KGPLMRLTGV DDPESVQRSV GGLRIIGLRL EQLAKDHGVS FKFRAVASKT SLIVSPSALG CKPGEALIVN FAFQLHHMPD ESVTVVNQRD VLLHMVKGLN
401: PKLVTVVEQD VNTNTSPFFP RFVEAYEYYS AVFDSLDVTL PRESQERMNV ERQCLARDIV NVVACEGEER IERYEVAGKW RARMMMAGFS SRPMGSRVAR
501: SMQSLIKEEY CSKYKVKEEM GELLFYWEDK SLIVASAWR
Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)
001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR
Arabidopsis Description
SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.