Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00533 | Canola | cytosol | 97.52 | 97.09 |
| CDX91655 | Canola | cytosol | 81.98 | 61.9 |
| CDY27063 | Canola | cytosol, plastid | 79.5 | 61.28 |
| AT5G52510.1 | Thale cress | nucleus | 83.56 | 57.97 |
| VIT_16s0050g00950.t01 | Wine grape | cytosol, nucleus, plastid | 57.88 | 43.63 |
| KRG91573 | Soybean | plastid | 53.83 | 40.24 |
| KRH35251 | Soybean | plastid | 52.93 | 39.83 |
| Solyc06g036170.1.1 | Tomato | nucleus | 53.6 | 39.8 |
| Solyc03g025170.1.1 | Tomato | nucleus | 56.31 | 39.62 |
| PGSC0003DMT400076932 | Potato | nucleus | 54.05 | 39.6 |
| KRH08880 | Soybean | plastid | 55.86 | 37.75 |
| PGSC0003DMT400026240 | Potato | nucleus, plastid | 54.95 | 37.31 |
| KRH38397 | Soybean | plastid | 44.59 | 36.67 |
| GSMUA_AchrUn_... | Banana | plastid | 47.75 | 36.24 |
| GSMUA_Achr4P26400_001 | Banana | cytosol, mitochondrion, plastid | 46.62 | 35.45 |
| GSMUA_Achr9P18770_001 | Banana | cytosol | 45.05 | 35.15 |
| GSMUA_Achr5P12810_001 | Banana | cytosol, plastid | 43.92 | 34.7 |
| GSMUA_Achr1P03650_001 | Banana | mitochondrion | 43.02 | 33.51 |
| CDY00883 | Canola | cytosol | 29.28 | 32.1 |
| CDY71156 | Canola | cytosol, plastid | 27.93 | 31.79 |
| CDX68389 | Canola | cytosol | 6.08 | 31.76 |
| GSMUA_Achr4P24960_001 | Banana | cytosol | 34.68 | 31.75 |
| Zm00001d026050_P001 | Maize | mitochondrion, nucleus, plastid | 43.92 | 31.3 |
| Zm00001d002573_P001 | Maize | cytosol | 43.47 | 30.98 |
| Os04t0580300-01 | Rice | cytosol, nucleus, plastid | 43.02 | 30.86 |
| TraesCS2D01G393200.1 | Wheat | cytosol | 43.47 | 30.78 |
| TraesCS2B01G413500.1 | Wheat | cytosol | 43.47 | 30.59 |
| Os02t0681900-01 | Rice | cytosol | 42.57 | 30.58 |
| Zm00001d051461_P001 | Maize | cytosol | 40.99 | 29.98 |
| HORVU2Hr1G094040.2 | Barley | cytosol, plastid | 25.9 | 29.87 |
| TraesCS2A01G395400.1 | Wheat | cytosol, mitochondrion, nucleus | 42.34 | 29.79 |
| CDY07309 | Canola | cytosol | 15.99 | 29.58 |
| CDY37124 | Canola | nucleus | 27.7 | 29.29 |
| CDY22807 | Canola | nucleus | 27.7 | 29.29 |
| EES12703 | Sorghum | cytosol, nucleus, plastid | 42.57 | 28.99 |
| CDY19966 | Canola | cytosol | 32.21 | 28.95 |
| EES05727 | Sorghum | cytosol | 40.99 | 28.93 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 32.21 | 28.77 |
| CDY05700 | Canola | cytosol, plastid | 31.98 | 28.57 |
| CDY00074 | Canola | cytosol, plastid | 31.98 | 28.57 |
| CDY71174 | Canola | cytosol, plastid | 31.98 | 28.57 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 31.76 | 28.37 |
| CDY61060 | Canola | cytosol | 34.23 | 28.2 |
| CDY00377 | Canola | cytosol | 34.68 | 28.0 |
| CDY50240 | Canola | cytosol | 35.36 | 27.26 |
| CDY68224 | Canola | cytosol | 34.68 | 26.74 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 18.92 | 26.5 |
| CDY58168 | Canola | plastid | 29.95 | 25.09 |
| CDY35589 | Canola | cytosol | 29.95 | 25.05 |
| CDY50128 | Canola | cytosol, plastid | 29.95 | 24.95 |
| CDY42968 | Canola | cytosol | 29.73 | 24.67 |
| CDY71578 | Canola | nucleus, plastid | 20.95 | 17.85 |
| CDY39530 | Canola | cytosol | 24.77 | 17.77 |
| CDY47877 | Canola | nucleus | 24.32 | 17.48 |
| CDX82987 | Canola | nucleus | 22.75 | 16.81 |
| CDY33040 | Canola | nucleus | 22.3 | 16.58 |
| CDY06266 | Canola | cytosol | 23.2 | 16.3 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 23.42 | 15.45 |
| CDX79750 | Canola | peroxisome | 23.42 | 15.43 |
| CDY06265 | Canola | cytosol | 22.97 | 14.78 |
| CDX68388 | Canola | cytosol | 13.74 | 14.73 |
| CDX86475 | Canola | nucleus | 23.2 | 14.51 |
| CDY47878 | Canola | nucleus | 22.3 | 14.33 |
| CDY09912 | Canola | cytosol | 22.52 | 14.29 |
| CDY15616 | Canola | nucleus | 22.52 | 13.99 |
| CDX77228 | Canola | cytosol | 20.72 | 13.69 |
| CDY31749 | Canola | cytosol | 22.07 | 13.5 |
| CDY09911 | Canola | nucleus | 16.44 | 12.5 |
Protein Annotations
| EnsemblPlants:CDY27821 | EnsemblPlantsGene:GSBRNA2T00038634001 | GO:A0A078GQW8 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:Scarecrow-like_8 |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF130 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDY27821 |
| ProteinID:CDY27821.1 | SEG:seg | UniParc:UPI0004EE29B0 | UniProt:A0A078GQW8 | MapMan:15.5.12 | : |
Description
BnaC09g28480DBnaC09g28480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQW8]
Coordinates
chrLK032210:+:74230..76196
Molecular Weight (calculated)
48196.0 Da
IEP (calculated)
4.891
GRAVY (calculated)
-0.226
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNSLRELEK QLLDDDDAQG GDDDVSVITH SNSDWLHGLV TPNPNPVLSS SPTSSSSSSS PSTASTTTSV CSRQTVLEIA TAIAEGKTEI ASEILARVSQ
101: TPSQRRNSEE KLVDFMVTAL RSRINPAESS APATELYGKE HIISTQLLYE LSPCFKLGFM AANLAILDAS GNNNDDGTSF HVIDFEIGEG GQYVNLLHAL
201: STRRSGKNPL VVRITAVTNI SDGFSRLKTI GDRLSELSDR LGISLKFNVV AGLRLSDLSR ESLGCDPDEP LAVNLAFKLY RVPDESVCME NPRDELLRRV
301: KGLNPSVVTL VEEEMNSNTA PFLGRVSESC ACYGALLDSV ESTVPSSNSD RAKVEEGIGR KLINAVACEG IDRVERCEVF GKWRMRMSMA GFELMPLSEK
401: IAESIKSRLS NGNRVHPGFT VKEENGGVCF GWMGRTLAVA SAWR
101: TPSQRRNSEE KLVDFMVTAL RSRINPAESS APATELYGKE HIISTQLLYE LSPCFKLGFM AANLAILDAS GNNNDDGTSF HVIDFEIGEG GQYVNLLHAL
201: STRRSGKNPL VVRITAVTNI SDGFSRLKTI GDRLSELSDR LGISLKFNVV AGLRLSDLSR ESLGCDPDEP LAVNLAFKLY RVPDESVCME NPRDELLRRV
301: KGLNPSVVTL VEEEMNSNTA PFLGRVSESC ACYGALLDSV ESTVPSSNSD RAKVEEGIGR KLINAVACEG IDRVERCEVF GKWRMRMSMA GFELMPLSEK
401: IAESIKSRLS NGNRVHPGFT VKEENGGVCF GWMGRTLAVA SAWR
001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR
Arabidopsis Description
SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.