Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021063.1-P | Field mustard | plastid | 100.0 | 100.0 |
| CDY50128 | Canola | cytosol, plastid | 97.55 | 97.0 |
| CDY35589 | Canola | cytosol | 88.68 | 88.51 |
| CDY42968 | Canola | cytosol | 88.87 | 88.04 |
| AT4G17230.1 | Thale cress | cytosol | 86.42 | 86.58 |
| KRH36572 | Soybean | cytosol | 60.38 | 58.39 |
| KRH51175 | Soybean | cytosol | 59.62 | 58.3 |
| KRH11548 | Soybean | nucleus | 60.38 | 57.97 |
| KRH01979 | Soybean | cytosol | 59.43 | 57.8 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 59.25 | 57.61 |
| PGSC0003DMT400034763 | Potato | cytosol | 55.66 | 55.24 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 56.42 | 55.17 |
| PGSC0003DMT400060553 | Potato | cytosol | 53.21 | 53.82 |
| PGSC0003DMT400021748 | Potato | nucleus | 56.6 | 53.67 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 32.64 | 52.74 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 49.43 | 52.3 |
| CDY07309 | Canola | cytosol | 23.58 | 52.08 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 53.96 | 51.72 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 41.32 | 51.41 |
| CDY00883 | Canola | cytosol | 37.74 | 49.38 |
| CDY22807 | Canola | nucleus | 39.06 | 49.29 |
| CDY37124 | Canola | nucleus | 39.06 | 49.29 |
| CDY71156 | Canola | cytosol, plastid | 36.23 | 49.23 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 50.0 | 48.18 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 43.96 | 47.65 |
| EER95348 | Sorghum | cytosol | 47.55 | 47.01 |
| Zm00001d006701_P001 | Maize | cytosol | 49.06 | 46.93 |
| Os03t0193000-01 | Rice | plastid | 47.36 | 46.92 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 43.96 | 46.88 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 47.36 | 46.83 |
| Os07t0583600-01 | Rice | plasma membrane | 47.92 | 46.69 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 43.77 | 46.68 |
| EER97449 | Sorghum | cytosol | 48.11 | 46.62 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 48.68 | 46.57 |
| CDY19966 | Canola | cytosol | 43.4 | 46.56 |
| CDY00074 | Canola | cytosol, plastid | 43.58 | 46.48 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 46.98 | 46.46 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 46.98 | 46.46 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 34.72 | 46.35 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 48.49 | 46.31 |
| CDY71174 | Canola | cytosol, plastid | 43.4 | 46.28 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 48.11 | 46.03 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 48.3 | 45.96 |
| CDY05700 | Canola | cytosol, plastid | 43.02 | 45.88 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 46.42 | 45.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.98 | 45.79 |
| Zm00001d030500_P001 | Maize | nucleus | 46.79 | 45.76 |
| Zm00001d021946_P001 | Maize | cytosol | 48.11 | 45.7 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 26.23 | 41.74 |
| HORVU5Hr1G099160.1 | Barley | plastid | 48.68 | 40.95 |
| CDY61060 | Canola | cytosol | 37.55 | 36.92 |
| CDY00377 | Canola | cytosol | 37.74 | 36.36 |
| CDY68224 | Canola | cytosol | 37.74 | 34.72 |
| CDY50240 | Canola | cytosol | 37.55 | 34.55 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 18.68 | 31.23 |
| CDY27821 | Canola | cytosol | 25.09 | 29.95 |
| CDX68389 | Canola | cytosol | 4.72 | 29.41 |
| CDY00533 | Canola | cytosol | 24.72 | 29.37 |
| CDY27063 | Canola | cytosol, plastid | 26.79 | 24.65 |
| CDY71578 | Canola | nucleus, plastid | 23.21 | 23.61 |
| CDX91655 | Canola | cytosol | 25.66 | 23.13 |
| CDY33040 | Canola | nucleus | 24.53 | 21.78 |
| CDY47877 | Canola | nucleus | 24.72 | 21.2 |
| CDY39530 | Canola | cytosol | 24.72 | 21.16 |
| CDY06266 | Canola | cytosol | 24.72 | 20.73 |
| CDX79750 | Canola | peroxisome | 26.04 | 20.47 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 25.85 | 20.36 |
| CDX68388 | Canola | cytosol | 15.85 | 20.29 |
| CDY47878 | Canola | nucleus | 26.23 | 20.12 |
| CDX82987 | Canola | nucleus | 22.64 | 19.97 |
| CDX86475 | Canola | nucleus | 26.23 | 19.58 |
| CDY15616 | Canola | nucleus | 25.66 | 19.02 |
| CDX77228 | Canola | cytosol | 23.58 | 18.6 |
| CDY31749 | Canola | cytosol | 25.09 | 18.32 |
| CDY06265 | Canola | cytosol | 23.21 | 17.83 |
| CDY09912 | Canola | cytosol | 23.21 | 17.57 |
| CDY09911 | Canola | nucleus | 18.3 | 16.61 |
Protein Annotations
| EnsemblPlants:CDY58168 | EnsemblPlantsGene:GSBRNA2T00023184001 | GO:A0A078IZV2 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:Scarecrow-like_13 |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF45 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDY58168 |
| ProteinID:CDY58168.1 | SEG:seg | UniParc:UPI0002546EE2 | UniProt:A0A078IZV2 | MapMan:15.5.12 | : |
Description
BnaA08g30240DBnaA08g30240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZV2]
Coordinates
chrLK033642:-:21385..23806
Molecular Weight (calculated)
58429.2 Da
IEP (calculated)
5.948
GRAVY (calculated)
-0.278
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTSQKHHSA AGLHMLYPQP HCSPQFQMID NNGSSKESFF TLESSTASGT TLPSYDSPSS VSIKSGRSPF SPQGSHSCIS DPHPSPENVY ESSLTAASSY
101: IYDEAGVKSK IRELEDTLLS SDPKVEEYSG FSPAAGKSWN WDELLALTPQ LDLKEVLLEG ARAVADGDFA TACGFIDVLE QMVSVSGSPI QRLGAYMAEG
201: LRARLEGSGG NIYRALKCNE PTGRELMSYM GVLYEICPYW KFAYTAANAA ILEATAGDNR IHVIDFQIAQ GSQYMFLIHE LAKRPGGPPL LRVTGVDDSQ
301: SYYARGGGLT LVGEKLANMA KSCGVPFEFH DAIMSGCEVH REHLGVEPGF AVVVNFPYVL HHMPDESVSV ENHRDRLLHL IKSLGPRLVT LVEQESNTNT
401: SPFLSRFAET LDYYTAMFES IDAARPRDDK QRISAEQHCV ARDIVNMIAC EERERVERHE VLGKWRVRMM MAGFVGWPVG GSAAFAASEM LKGYDKNYKL
501: GGSDGALYLF WKRRPMATCS AWKPNLNQIV
101: IYDEAGVKSK IRELEDTLLS SDPKVEEYSG FSPAAGKSWN WDELLALTPQ LDLKEVLLEG ARAVADGDFA TACGFIDVLE QMVSVSGSPI QRLGAYMAEG
201: LRARLEGSGG NIYRALKCNE PTGRELMSYM GVLYEICPYW KFAYTAANAA ILEATAGDNR IHVIDFQIAQ GSQYMFLIHE LAKRPGGPPL LRVTGVDDSQ
301: SYYARGGGLT LVGEKLANMA KSCGVPFEFH DAIMSGCEVH REHLGVEPGF AVVVNFPYVL HHMPDESVSV ENHRDRLLHL IKSLGPRLVT LVEQESNTNT
401: SPFLSRFAET LDYYTAMFES IDAARPRDDK QRISAEQHCV ARDIVNMIAC EERERVERHE VLGKWRVRMM MAGFVGWPVG GSAAFAASEM LKGYDKNYKL
501: GGSDGALYLF WKRRPMATCS AWKPNLNQIV
001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN
Arabidopsis Description
SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.