Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G266400.1 | Wheat | cytosol | 98.16 | 89.55 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 97.95 | 89.37 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 95.91 | 87.34 |
| Os03t0193000-01 | Rice | plastid | 80.16 | 73.27 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 74.64 | 68.1 |
| EER95348 | Sorghum | cytosol | 74.44 | 67.91 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 66.26 | 64.67 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 53.99 | 61.97 |
| CDY07309 | Canola | cytosol | 27.4 | 55.83 |
| Bra026077.1-P | Field mustard | cytosol | 32.72 | 54.42 |
| Bra015156.1-P | Field mustard | cytosol | 34.76 | 53.46 |
| CDY00883 | Canola | cytosol | 43.15 | 52.1 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 34.76 | 51.83 |
| AT2G04890.1 | Thale cress | cytosol | 43.15 | 51.09 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 56.65 | 50.83 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 39.67 | 48.87 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 53.99 | 48.44 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 49.08 | 48.29 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 53.78 | 48.26 |
| AT5G48150.4 | Thale cress | cytosol | 48.26 | 48.16 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 48.88 | 48.09 |
| PGSC0003DMT400015696 | Potato | cytosol | 52.56 | 48.04 |
| KRH74015 | Soybean | cytosol | 52.97 | 47.87 |
| CDY19966 | Canola | cytosol | 48.26 | 47.77 |
| CDY71156 | Canola | cytosol, plastid | 38.04 | 47.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.72 | 47.66 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 48.26 | 47.48 |
| CDY71174 | Canola | cytosol, plastid | 48.26 | 47.48 |
| CDY05700 | Canola | cytosol, plastid | 48.26 | 47.48 |
| Bra036185.1-P | Field mustard | cytosol | 48.06 | 47.47 |
| KRH14104 | Soybean | cytosol | 52.76 | 47.34 |
| CDY00074 | Canola | cytosol, plastid | 47.85 | 47.08 |
| CDY37124 | Canola | nucleus | 40.08 | 46.67 |
| CDY22807 | Canola | nucleus | 40.08 | 46.67 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 51.53 | 46.24 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 52.15 | 46.03 |
| Bra018860.1-P | Field mustard | nucleus | 49.28 | 45.9 |
| Solyc07g065270.1.1 | Tomato | nucleus | 50.31 | 45.72 |
| KRH73868 | Soybean | cytosol | 50.92 | 45.69 |
| PGSC0003DMT400057111 | Potato | nucleus | 49.9 | 45.44 |
| KRH14274 | Soybean | cytosol | 50.51 | 45.32 |
| PGSC0003DMT400060553 | Potato | cytosol | 48.26 | 45.04 |
| KRH01979 | Soybean | cytosol | 49.9 | 44.77 |
| KRH51175 | Soybean | cytosol | 49.08 | 44.28 |
| PGSC0003DMT400034763 | Potato | cytosol | 48.26 | 44.19 |
| KRG98562 | Soybean | nucleus | 49.08 | 44.04 |
| CDY58168 | Canola | plastid | 47.65 | 43.96 |
| Bra021063.1-P | Field mustard | plastid | 47.65 | 43.96 |
| KRH11548 | Soybean | nucleus | 49.49 | 43.84 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 48.47 | 43.73 |
| KRH46306 | Soybean | cytosol | 48.67 | 43.67 |
| AT4G17230.1 | Thale cress | cytosol | 47.24 | 43.67 |
| KRH36572 | Soybean | cytosol | 48.88 | 43.61 |
| CDY50128 | Canola | cytosol, plastid | 47.44 | 43.53 |
| CDY35589 | Canola | cytosol | 46.83 | 43.13 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 48.47 | 42.86 |
| CDY42968 | Canola | cytosol | 46.83 | 42.8 |
| PGSC0003DMT400021748 | Potato | nucleus | 48.88 | 42.75 |
| Bra026237.1-P | Field mustard | plastid | 46.63 | 42.62 |
| KRH38269 | Soybean | cytosol | 30.47 | 42.21 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 49.49 | 40.27 |
| TraesCS2A01G214400.1 | Wheat | cytosol | 42.94 | 36.84 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 23.52 | 34.53 |
| TraesCS3A01G408000.1 | Wheat | cytosol | 37.63 | 33.33 |
| TraesCS5A01G505900.1 | Wheat | cytosol | 21.27 | 25.68 |
| TraesCS2A01G395400.1 | Wheat | cytosol, mitochondrion, nucleus | 27.61 | 21.39 |
| TraesCS4A01G176400.1 | Wheat | cytosol | 21.47 | 21.08 |
| TraesCS4A01G176500.1 | Wheat | cytosol | 20.45 | 20.08 |
| TraesCS4A01G176700.1 | Wheat | cytosol | 24.74 | 18.14 |
| TraesCS5A01G506000.1 | Wheat | cytosol | 22.29 | 18.05 |
| TraesCS4A01G177100.1 | Wheat | nucleus | 23.11 | 17.57 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 23.31 | 17.4 |
| TraesCS5A01G506100.1 | Wheat | cytosol | 22.7 | 17.26 |
| TraesCS4A01G176600.1 | Wheat | cytosol | 22.7 | 17.1 |
| TraesCS4A01G176300.1 | Wheat | cytosol | 23.31 | 16.89 |
| TraesCS5A01G080300.1 | Wheat | cytosol | 25.15 | 16.53 |
| TraesCS7A01G173000.1 | Wheat | cytosol | 24.34 | 15.91 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 22.9 | 15.53 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 22.09 | 15.3 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 22.29 | 15.22 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 23.93 | 15.08 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 21.68 | 14.68 |
| TraesCS3A01G360300.1 | Wheat | cytosol, extracellular, nucleus | 22.7 | 14.05 |
| TraesCS4A01G176200.1 | Wheat | peroxisome | 22.7 | 13.84 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G039000.1 | EnsemblPlantsGene:TraesCS4A01G039000 | InterPro:CIGR2 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF31 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : |
Description
No Description!
Coordinates
chr4A:+:31411205..31416651
Molecular Weight (calculated)
54019.4 Da
IEP (calculated)
5.950
GRAVY (calculated)
-0.294
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKASNMSY RYPDNSQIPY YSSSMHVGGN GTCYVQQNHE DHHYVSSDGG SQNSDSKSQV IHPQYSTLES SSANCVYAAN SSTSPQCISG SHISLHDSHS
101: DHTYDSPASG ITEVPGLGFT TLQELADALF GSDSDAVSSD RSLVIGAAMH QSNWRELLGI SSGDLKQVIV ACGKAVDENN CHEDLLISEL QKMVSVSGEP
201: IQRLGAYMLE GLVARRYSTG HALYKSLKCK EPQPTNSELM SYMHLLYDIC PFFRFGYMSA NGAIAEAVKG ENFIHIIDFQ IAQGSQWVTM IQALAARVSG
301: PPYLRITGID DSDSAYARGG GLDIVGRRLC NIAQSCCLPF EFNAVNAASH EVTLEHLDIR KGEAIAVNFA YQLHHTPDES VCIENHRDRI LRMVKSLSPR
401: VVTLVEQEAN TNTAPFFSRY METLDYYTAM FEAIDVACPR DDKVRMSTEQ HCVARDIVNL IACEGAERVE RHEPFGKWRS RFAMAGFRR
101: DHTYDSPASG ITEVPGLGFT TLQELADALF GSDSDAVSSD RSLVIGAAMH QSNWRELLGI SSGDLKQVIV ACGKAVDENN CHEDLLISEL QKMVSVSGEP
201: IQRLGAYMLE GLVARRYSTG HALYKSLKCK EPQPTNSELM SYMHLLYDIC PFFRFGYMSA NGAIAEAVKG ENFIHIIDFQ IAQGSQWVTM IQALAARVSG
301: PPYLRITGID DSDSAYARGG GLDIVGRRLC NIAQSCCLPF EFNAVNAASH EVTLEHLDIR KGEAIAVNFA YQLHHTPDES VCIENHRDRI LRMVKSLSPR
401: VVTLVEQEAN TNTAPFFSRY METLDYYTAM FEAIDVACPR DDKVRMSTEQ HCVARDIVNL IACEGAERVE RHEPFGKWRS RFAMAGFRR
001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.