Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026077.1-P | Field mustard | cytosol | 48.25 | 98.64 |
| CDY37124 | Canola | nucleus | 66.39 | 95.0 |
| CDY22807 | Canola | nucleus | 66.22 | 94.76 |
| CDY71156 | Canola | cytosol, plastid | 60.9 | 93.85 |
| Bra018860.1-P | Field mustard | nucleus | 81.03 | 92.76 |
| CDY07309 | Canola | cytosol | 35.77 | 89.58 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 35.77 | 65.55 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 54.91 | 60.55 |
| AT2G04890.1 | Thale cress | cytosol | 41.6 | 60.53 |
| AT5G48150.4 | Thale cress | cytosol | 48.92 | 60.0 |
| KRH73868 | Soybean | cytosol | 52.58 | 57.98 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 37.94 | 57.43 |
| KRH14274 | Soybean | cytosol | 51.91 | 57.25 |
| KRH46306 | Soybean | cytosol | 50.92 | 56.15 |
| KRG98562 | Soybean | nucleus | 50.92 | 56.15 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 39.43 | 55.63 |
| Solyc07g065270.1.1 | Tomato | nucleus | 49.58 | 55.39 |
| PGSC0003DMT400057111 | Potato | nucleus | 49.42 | 55.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.1 | 54.91 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 45.59 | 54.69 |
| Os07t0583600-01 | Rice | plasma membrane | 49.08 | 54.23 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 48.59 | 52.71 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 48.42 | 52.43 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 48.25 | 52.35 |
| EER97449 | Sorghum | cytosol | 47.59 | 52.29 |
| Os03t0193000-01 | Rice | plastid | 46.42 | 52.15 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 47.92 | 51.71 |
| Zm00001d021946_P001 | Maize | cytosol | 47.92 | 51.61 |
| Zm00001d006701_P001 | Maize | cytosol | 47.42 | 51.44 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 45.42 | 50.93 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 45.26 | 50.75 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 45.09 | 50.56 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 46.26 | 50.55 |
| EER95348 | Sorghum | cytosol | 44.93 | 50.37 |
| Zm00001d030500_P001 | Maize | nucleus | 45.42 | 50.37 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 44.59 | 49.91 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 40.27 | 49.49 |
| KRH38269 | Soybean | cytosol | 27.79 | 47.31 |
| AT4G17230.1 | Thale cress | cytosol | 41.43 | 47.07 |
| HORVU5Hr1G099160.1 | Barley | plastid | 45.59 | 43.49 |
| AT1G21450.1 | Thale cress | nucleus | 36.44 | 36.93 |
| AT5G52510.1 | Thale cress | nucleus | 25.12 | 23.59 |
| AT3G46600.1 | Thale cress | cytosol | 20.97 | 21.61 |
| AT2G29065.1 | Thale cress | cytosol, nucleus, plastid | 22.46 | 21.43 |
| AT5G59450.1 | Thale cress | nucleus | 20.8 | 20.49 |
| AT1G07520.3 | Thale cress | cytosol | 22.96 | 19.83 |
| AT2G29060.1 | Thale cress | cytosol | 22.63 | 19.6 |
| AT2G37650.1 | Thale cress | cytosol | 23.29 | 19.5 |
| AT1G07530.1 | Thale cress | cytosol | 24.46 | 19.12 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:841482 | UniProt:A0A1P8AW90 | ProteinID:AAF87875.1 | ProteinID:AAG51190.1 | ProteinID:AEE32568.1 |
| EMBL:AF036302 | ProteinID:ANM60928.1 | ProteinID:ANM60929.1 | ArrayExpress:AT1G50600 | EnsemblPlantsGene:AT1G50600 | RefSeq:AT1G50600 |
| TAIR:AT1G50600 | RefSeq:AT1G50600-TAIR-G | EnsemblPlants:AT1G50600.2 | EMBL:AY034929 | EMBL:AY039611 | Unigene:At.14827 |
| EMBL:BT000883 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | RefSeq:NP_001323176.1 | RefSeq:NP_001323177.1 | RefSeq:NP_175475.2 |
| PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF57 | Symbol:SCL5 | InterPro:TF_GRAS |
| UniParc:UPI0008496BD1 | SEG:seg | : | : | : | : |
Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
Coordinates
chr1:-:18737063..18739649
Molecular Weight (calculated)
67173.8 Da
IEP (calculated)
6.273
GRAVY (calculated)
-0.348
Length
601 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIKMRLSVF IIPLVESRQA SGIINKQSTS LLIRFSLYLE ASISTKSFFS KSQRISQTQS PICLSANYYQ PDNLDMEATQ KHMIQEGSSM FYHQPSSVKQ
101: MDLSVQTFDS YCTLESSSGT KSHPCLNNKN NSSSTTSFSS NESPISQANN NNLSRFNNHS PEENNNSPLS GSSATNTNET ELSLMLKDLE TAMMEPDVDN
201: SYNNQGGFGQ QHGVVSSAMY RSMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT
301: GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPNVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM
401: CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID
501: VKLARDHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLITSCAW
601: R
101: MDLSVQTFDS YCTLESSSGT KSHPCLNNKN NSSSTTSFSS NESPISQANN NNLSRFNNHS PEENNNSPLS GSSATNTNET ELSLMLKDLE TAMMEPDVDN
201: SYNNQGGFGQ QHGVVSSAMY RSMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT
301: GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPNVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM
401: CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID
501: VKLARDHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLITSCAW
601: R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.