Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71174 | Canola | cytosol, plastid | 89.39 | 88.13 |
| CDY05700 | Canola | cytosol, plastid | 89.39 | 88.13 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 89.39 | 88.13 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 88.37 | 87.12 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 87.35 | 86.12 |
| CDY00074 | Canola | cytosol, plastid | 86.94 | 85.71 |
| Bra036185.1-P | Field mustard | cytosol | 86.53 | 85.66 |
| CDY19966 | Canola | cytosol | 85.71 | 85.02 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 46.53 | 69.51 |
| AT2G04890.1 | Thale cress | cytosol | 57.14 | 67.8 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 73.67 | 66.24 |
| PGSC0003DMT400015696 | Potato | cytosol | 70.82 | 64.86 |
| KRH74015 | Soybean | cytosol | 71.43 | 64.69 |
| KRH14104 | Soybean | cytosol | 71.84 | 64.59 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 70.61 | 63.49 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 52.04 | 59.86 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 46.94 | 57.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.59 | 56.78 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 55.31 | 54.09 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 56.12 | 51.31 |
| Os03t0193000-01 | Rice | plastid | 55.71 | 51.03 |
| Os07t0583600-01 | Rice | plasma membrane | 56.53 | 50.92 |
| EER95348 | Sorghum | cytosol | 55.51 | 50.75 |
| Zm00001d030500_P001 | Maize | nucleus | 56.12 | 50.74 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 56.33 | 50.18 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 54.69 | 50.0 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 56.53 | 50.0 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 56.73 | 49.91 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 56.33 | 49.82 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 54.29 | 49.63 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 56.12 | 49.55 |
| Zm00001d006701_P001 | Maize | cytosol | 55.71 | 49.28 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 53.67 | 48.98 |
| Zm00001d021946_P001 | Maize | cytosol | 55.71 | 48.92 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 60.0 | 48.92 |
| EER97449 | Sorghum | cytosol | 54.49 | 48.81 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 48.16 | 48.26 |
| AT4G17230.1 | Thale cress | cytosol | 48.98 | 45.37 |
| HORVU5Hr1G099160.1 | Barley | plastid | 55.92 | 43.49 |
| AT1G21450.1 | Thale cress | nucleus | 43.67 | 36.09 |
| AT5G52510.1 | Thale cress | nucleus | 29.18 | 22.34 |
| AT2G29065.1 | Thale cress | cytosol, nucleus, plastid | 26.94 | 20.95 |
| AT3G46600.1 | Thale cress | cytosol | 24.29 | 20.41 |
| AT5G59450.1 | Thale cress | nucleus | 24.69 | 19.84 |
| AT2G29060.1 | Thale cress | cytosol | 26.53 | 18.73 |
| AT2G37650.1 | Thale cress | cytosol | 26.53 | 18.11 |
| AT1G07520.3 | Thale cress | cytosol | 25.31 | 17.82 |
| AT1G07530.1 | Thale cress | cytosol | 27.14 | 17.3 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:834867 | ProteinID:AED95624.1 | ProteinID:AED95625.1 | EMBL:AF153443 | EMBL:AK117483 |
| EMBL:AK317252 | EMBL:AK317747 | ProteinID:ANM70908.1 | ProteinID:ANM70909.1 | ArrayExpress:AT5G48150 | EnsemblPlantsGene:AT5G48150 |
| RefSeq:AT5G48150 | TAIR:AT5G48150 | RefSeq:AT5G48150-TAIR-G | EnsemblPlants:AT5G48150.4 | Unigene:At.7076 | UniProt:B9DGR4 |
| ProteinID:BAA96995.1 | EMBL:BT025326 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009585 | GO:GO:0009605 |
| GO:GO:0009628 | GO:GO:0009640 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 |
| RefSeq:NP_001332482.1 | RefSeq:NP_001332483.1 | RefSeq:NP_199626.1 | RefSeq:NP_974903.1 | Symbol:PAT1 | PFAM:PF03514 |
| PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF57 | UniProt:Q9LDL7 | InterPro:TF_GRAS | UniParc:UPI00000AAAF2 |
| SEG:seg | : | : | : | : | : |
Description
PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
Coordinates
chr5:-:19522255..19524698
Molecular Weight (calculated)
55293.2 Da
IEP (calculated)
6.584
GRAVY (calculated)
-0.287
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.